BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0020.p         (225 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN1971 [P] COG1629 Outer membrane receptor proteins, mostly Fe t...   102   5e-22
FN0886 [P] COG1629 Outer membrane receptor proteins, mostly Fe t...    80   3e-15
FN0768 [P] COG1629 Outer membrane receptor proteins, mostly Fe t...    74   3e-13
alr2175 [P] COG1629 Outer membrane receptor proteins, mostly Fe ...    69   6e-12
Cj1614 [P] COG1629 Outer membrane receptor proteins, mostly Fe t...    69   8e-12

>FN1971 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport
           Fnu Fusobacterium nucleatum
          Length = 657

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 11/162 (6%)

Query: 4   TVIGAEDIRNAGIDNVNEAIRKLGGVYGRQSL-AGPGDFALDMRGFGSNGDQNMVILING 62
           TVI A++I+  G   + +A+R + GV  RQ   A P    +D+RG G+    N VIL++G
Sbjct: 50  TVINAKEIKEKGAKTIADALRGVPGVVVRQMDGASP---MVDLRGSGATSQFNTVILLDG 106

Query: 63  VRLSENELSTALLSSVPIDSVERIEIVRGGSSVLYGDGATGGTIQIITKRPAADAVHGSV 122
           + +S   L+   L++VP+D +E+IE+++G  +V+YGDGA GG + IITK P   AV+G  
Sbjct: 107 IPVSG--LAGFNLNTVPVDEIEKIEVLQGAGAVMYGDGAIGGVVNIITKAPTKKAVYGGA 164

Query: 123 VGEVGNYGLRSGRASVAKG---WDGFALNAAYSKQHADNYRD 161
             EVG++  R+ R +V  G    D F LNA+YS   + +YRD
Sbjct: 165 GLEVGSW--RTIRENVYLGGKIGDKFLLNASYSGNSSKDYRD 204


>FN0886 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport
           Fnu Fusobacterium nucleatum
          Length = 660

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 17/171 (9%)

Query: 3   ATVIGAEDIRNAGIDNVNEAIRKLGGVYGRQSLAGPGDFALDMRGFGS-NGDQNMVILIN 61
            T++ A+DI   G  N+ +A+R + G+  +      G+ A D+ G+ S + ++N +I  +
Sbjct: 47  VTIVTAKDIEEKGAQNLVDALRMVPGIMVKNYY---GNIAFDIGGYSSVHAERNSIITYD 103

Query: 62  GVRLSENELSTALLSSVPIDSVERIEIVRGGSSVLYGDGATGGTIQIITK----RPAADA 117
           GVR+S  E +     ++PI  +ER+E++  G  +LYGDGA GG I I++K    +     
Sbjct: 104 GVRISAKEAT-----NIPISVIERVEVIPNGGGILYGDGANGGVINILSKSIYGKDNNKK 158

Query: 118 VHGSVVGEVGNYG-LRSGRASVAKGWDGFALNAAYSKQHADNYRDNNASNQ 167
           + G+V  E G+ G  + G +++AK  D       YS+   D YR    S++
Sbjct: 159 ISGNVRTEYGSRGSYKYGFSTIAKATDKLTFKVDYSR---DRYRSERDSDE 206


>FN0768 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport
           Fnu Fusobacterium nucleatum
          Length = 715

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 14/183 (7%)

Query: 5   VIGAEDIRNAGIDNVNEAIRKLGGVYGRQSLAGPGDFALDMRGFGSNGDQNMV-ILINGV 63
           +I ++DI   G  +V+E +  + GV  ++ L      A+D+RG G    +  V +L++GV
Sbjct: 43  IITSKDIETKGYTSVSEILDSVPGVNVQEGLRP----AVDVRGQGFQKAKATVQLLVDGV 98

Query: 64  RLSENELSTALLSSVPID-----SVERIEIVRGGSSVLYGDGATGGTIQIITKR-PAADA 117
               N L T+ ++ VPID      +ERIE++ GG +VLYG G +GG I IITK+    + 
Sbjct: 99  --PANMLDTSHMN-VPIDVVNINEIERIEVIPGGGAVLYGSGTSGGVINIITKKYKGNNN 155

Query: 118 VHGSVVGEVGNYGLRSGRASVAKGWDGFALNAAYSKQHADNYRDNNASNQENFSGTAQWF 177
           V G V  ++ ++       S       F  +  YSK     YRD + +N + FSG   + 
Sbjct: 156 VRGGVGYQLASFRNNKFDVSAGTSVGDFDFDINYSKNRKYGYRDYDFTNSDYFSGRINYN 215

Query: 178 SNE 180
            N+
Sbjct: 216 INK 218


>alr2175 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport
           Nos Nostoc sp. PCC 7120
          Length = 863

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 21/174 (12%)

Query: 5   VIGAEDIRNAGIDNVNEAIRKLGGVYGRQSLAGPGDFA-LDMRGFGSNGDQNMVILINGV 63
           V+  + +++  ++ +NEA++ + GV   Q+ +    FA   +RGF S  DQ       G 
Sbjct: 233 VVPQQVLKDQQVNTLNEALQNVSGVI--QTASNYSQFASFTIRGFNS-FDQG------GN 283

Query: 64  RLSENELSTALLSS-VPIDSVERIEIVRGGSSVLYGDGATGGTIQIITKRPAADAVHGSV 122
             + N L     S      ++ERIE++RG  SVL+G G  GGTI I+TK+P ++  + SV
Sbjct: 284 NFTRNGLGYRFGSQGTNFSNIERIEVLRGPGSVLFGSGNPGGTINIVTKQPLSEPFY-SV 342

Query: 123 VGEVGNYGLRSGRASVAKGWDG-----FALNAAYSKQHADNYRDNNASNQENFS 171
              +G+Y    G   ++   D      + LNA+Y K  ADN+ D N  ++ENFS
Sbjct: 343 EAAIGSYDFYRGAIDLSGPLDDSKTALYRLNASYEK--ADNFVDFN--DRENFS 392


>Cj1614 [P] COG1629 Outer membrane receptor proteins, mostly Fe transport
           Cje Campylobacter jejuni
          Length = 709

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 5/114 (4%)

Query: 6   IGAEDIRNAGIDNVNEAIRKLGGVYGRQSLAGPGDFALDMRGFGSNGDQNMVILING--V 63
           I  +D++N G  ++ +A+ ++  +       G     +DMRG G+  +  + ++I+G  +
Sbjct: 56  IEGKDLQNKGYVSLEQALERISSISFVNFGLGRN---IDMRGQGNKSNIAVKVMIDGHAI 112

Query: 64  RLSENELSTALLSSVPIDSVERIEIVRGGSSVLYGDGATGGTIQIITKRPAADA 117
            + +N      L S+ +D+VERIEI+ GG SVLYG G  GG I IITK+  +DA
Sbjct: 113 NVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITKKQKSDA 166