BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0017.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and rela...    99   3e-21
VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and rela...    93   2e-19
Cj0284c_1 [NT] COG0643 Chemotaxis protein histidine kinase and r...    72   2e-13
jhp0989_1 [NT] COG0643 Chemotaxis protein histidine kinase and r...    71   6e-13
HP0392_1 [NT] COG0643 Chemotaxis protein histidine kinase and re...    71   6e-13

>PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and related
          kinases Pae Pseudomonas aeruginosa
          Length = 753

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 61/80 (76%)

Query: 2  DDEMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVS 61
          D+E+L+DF+VEA ++   + E L+ LE  PDD+++LNA+FR FHT+KGGAGF+ L A+V 
Sbjct: 6  DEEILQDFLVEAGEILEQLSEQLVELESRPDDMDLLNAIFRGFHTVKGGAGFLQLNALVE 65

Query: 62 ACHLTENLFDALRTGKASVT 81
           CH+ EN+FD LR G+  V+
Sbjct: 66 CCHIAENVFDILRKGERRVS 85


>VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and related
          kinases Vch Vibrio cholerae
          Length = 785

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 61/82 (74%)

Query: 1  MDDEMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60
          +D+++L+DF+VEA ++   + E L+ LE +P+D ++LNA+FR FHT+KGGAGF+ L  +V
Sbjct: 5  LDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELV 64

Query: 61 SACHLTENLFDALRTGKASVTP 82
            CH  EN+FD LR G+  V+P
Sbjct: 65 ETCHGAENVFDILRNGQRHVSP 86


>Cj0284c_1 [NT] COG0643 Chemotaxis protein histidine kinase and related
          kinases Cje Campylobacter jejuni
          Length = 622

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 51/79 (64%)

Query: 4  EMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSAC 63
          E+L+DF+VEA +L   ++  L+ LE +P+DLE+LN +FR  HT+KG + F+N   +    
Sbjct: 6  EILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFRVAHTVKGSSSFLNFDVLTKLT 65

Query: 64 HLTENLFDALRTGKASVTP 82
          H  E++ +  R G+  +TP
Sbjct: 66 HHMEDVLNKARHGELKITP 84


>jhp0989_1 [NT] COG0643 Chemotaxis protein histidine kinase and related
          kinases jHp Helicobacter pylori J99
          Length = 663

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 1  MDD--EMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPA 58
          MDD  E+++DF++EA ++   +++ L+ LE +P+DL++LN +FR  HTIKG + F+NL  
Sbjct: 1  MDDLQEIMEDFLIEAFEMNEQLDQDLVELEHNPEDLDLLNRIFRVAHTIKGSSSFLNLNI 60

Query: 59 MVSACHLTENLFDALRTGKASVTP 82
          +    H  E++ +  R G+  +TP
Sbjct: 61 LTHLTHNMEDVLNRARKGEIKITP 84


>HP0392_1 [NT] COG0643 Chemotaxis protein histidine kinase and related
          kinases Hpy Helicobacter pylori 26695
          Length = 651

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 1  MDD--EMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPA 58
          MDD  E+++DF++EA ++   +++ L+ LE +P+DL++LN +FR  HTIKG + F+NL  
Sbjct: 1  MDDLQEIMEDFLIEAFEMNEQLDQDLVELEHNPEDLDLLNRIFRVAHTIKGSSSFLNLNI 60

Query: 59 MVSACHLTENLFDALRTGKASVTP 82
          +    H  E++ +  R G+  +TP
Sbjct: 61 LTHLTHNMEDVLNRARKGEIKITP 84