BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0013.p         (72 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2427 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   129   1e-30
RSc1348 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...    96   3e-20
cbl [K] COG0583 Transcriptional regulator Eco Escherichia coli K12     92   4e-19
Zcbl [K] COG0583 Transcriptional regulator EcZ Escherichia coli ...    92   4e-19
ECs2783 [K] COG0583 Transcriptional regulator Ecs Escherichia co...    92   4e-19

>RSc2427 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 313

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/64 (95%), Positives = 63/64 (98%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MNLHQFRFVREAVRQ +NLTEAAKAL+TSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT
Sbjct: 1  MNLHQFRFVREAVRQKFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60

Query: 61 EPGR 64
          EPGR
Sbjct: 61 EPGR 64


>RSc1348 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 327

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 53/64 (82%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MN  Q R +REAVR+ +NLTE A AL+TSQPGVS+ I ELE+ELGV+IF R+GKR+ GLT
Sbjct: 1  MNFQQLRSIREAVRRQFNLTEVANALYTSQPGVSRQIRELEDELGVEIFERYGKRLTGLT 60

Query: 61 EPGR 64
          EPGR
Sbjct: 61 EPGR 64


>cbl [K] COG0583 Transcriptional regulator Eco Escherichia coli K12
          Length = 316

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 51/65 (78%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MN  Q + +REA RQ+YNLTE A  LFTSQ GVS+ I ELE+ELG++IF R GKR+ G+T
Sbjct: 1  MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMT 60

Query: 61 EPGRA 65
          EPG+A
Sbjct: 61 EPGKA 65


>Zcbl [K] COG0583 Transcriptional regulator EcZ Escherichia coli
          O157:H7 EDL933
          Length = 316

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 51/65 (78%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MN  Q + +REA RQ+YNLTE A  LFTSQ GVS+ I ELE+ELG++IF R GKR+ G+T
Sbjct: 1  MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMT 60

Query: 61 EPGRA 65
          EPG+A
Sbjct: 61 EPGKA 65


>ECs2783 [K] COG0583 Transcriptional regulator Ecs Escherichia coli
          O157:H7
          Length = 316

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 51/65 (78%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MN  Q + +REA RQ+YNLTE A  LFTSQ GVS+ I ELE+ELG++IF R GKR+ G+T
Sbjct: 1  MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMT 60

Query: 61 EPGRA 65
          EPG+A
Sbjct: 61 EPGKA 65