BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0009.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2424 [S] COG3749 Uncharacterized protein conserved in bacteri...   172   3e-43
PA1837 [S] COG3749 Uncharacterized protein conserved in bacteria...   160   1e-39
PA4129 [S] COG3749 Uncharacterized protein conserved in bacteria...   129   3e-30
CC1120 Non COG                                                         85   9e-17
RSc1863 [S] COG3749 Uncharacterized protein conserved in bacteri...    84   2e-16

>RSc2424 [S] COG3749 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 194

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 115/182 (63%), Gaps = 8/182 (4%)

Query: 3   NTAHIIK----DKVVISDDWTVLRLNEG-ETPEGVAVPEGKIIVPLKVWQAQRGNLQGRP 57
           N + IIK       +++D+WTVLR  EG E  +       + IVPL  WQA R  L  R 
Sbjct: 12  NMSKIIKLQDGTPQIVADEWTVLRAPEGGELAQSEVDAAARAIVPLAYWQANREALASRA 71

Query: 58  E---LGVWFASDERPEALKDDLQPFKVIAVDFPKFADGRGYSIAYNLRARLGYTGELRAI 114
               L VW A D+ P AL DDL    ++AVDFP F DGRGYS A+ LR RLG+  ELRAI
Sbjct: 72  RAGTLAVWLAPDDEPSALADDLASLPLVAVDFPVFRDGRGYSTAFLLRQRLGFARELRAI 131

Query: 115 GDVLRDQLFYMQRVGFNAFAVRADKNIHDALKGLTDFSEKYQTSWDEKNPLFRRAKRETV 174
           GDVLRDQL +M+R GF+AFAVRADK+I DAL G  + S +YQ + DE  PLFRR +  TV
Sbjct: 132 GDVLRDQLDFMRRCGFDAFAVRADKSIDDALNGFGEISVRYQGAIDEPRPLFRRERASTV 191

Query: 175 AT 176
           + 
Sbjct: 192 SA 193


>PA1837 [S] COG3749 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 165

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 112/163 (68%), Gaps = 4/163 (2%)

Query: 7   IIKDKVVISDDWTVLRLNEGETPEGVAVPEGKIIVPLKVWQAQRGNLQGRPE-LGVWFAS 65
           IIKD+ V+ D W +L   +  T E V   +  +I+PL +W      L+GR   LGVW  +
Sbjct: 4   IIKDRQVVDDRWHLL--PKDATLESVPNSD-DVIIPLALWLEHGPALRGRDGGLGVWLDA 60

Query: 66  DERPEALKDDLQPFKVIAVDFPKFADGRGYSIAYNLRARLGYTGELRAIGDVLRDQLFYM 125
           DE PE++  DL  F+VIAV+FP F DGRG+S A  LR R GY GE+RAIGDVLRDQLF+M
Sbjct: 61  DEEPESIAGDLDRFQVIAVNFPAFTDGRGFSSARLLRERYGYKGEIRAIGDVLRDQLFFM 120

Query: 126 QRVGFNAFAVRADKNIHDALKGLTDFSEKYQTSWDEKNPLFRR 168
           +R GF+A+A+RAD++  DAL  L DFSE YQTS ++  PLFRR
Sbjct: 121 RRCGFDAYAIRADRSPEDALASLDDFSEVYQTSVEQPLPLFRR 163


>PA4129 [S] COG3749 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 162

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 76/107 (71%)

Query: 62  WFASDERPEALKDDLQPFKVIAVDFPKFADGRGYSIAYNLRARLGYTGELRAIGDVLRDQ 121
           W A D+  EAL        +IAVDFP F DGRGYS+AY LR RLG++GELRA+GDVLRDQ
Sbjct: 55  WLAPDDEVEALLPHFAELPLIAVDFPSFRDGRGYSLAYLLRVRLGWSGELRAVGDVLRDQ 114

Query: 122 LFYMQRVGFNAFAVRADKNIHDALKGLTDFSEKYQTSWDEKNPLFRR 168
           L +M++ GF+AFAVR DKN+ DALKGL   S  Y  S  E  PLFRR
Sbjct: 115 LSHMRQCGFDAFAVREDKNVEDALKGLAGLSVLYGRSAIEPRPLFRR 161


>CC1120 Non COG
          Length = 168

 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 4/138 (2%)

Query: 28  TPEGVAVPEGKIIVPLKVWQAQRGNL--QGRPELGVWFASDERPEALKDDLQPFKVIAVD 85
           T E    P G +I+ L  +QA+   L      ++GV    D+  E L  DL    V+A+ 
Sbjct: 23  TDEDAIPPSGDVILSLARFQAEGDALLASNSRQVGVRIEPDQEVEVLAYDLPRIAVVALA 82

Query: 86  FPKFADGRGYSIAYNLRARLGYTGELRAIGDVLRDQLFYMQRVGFNAFAVRADKNIHDAL 145
           FPKF DGR Y+ A  LR R GY G +RA+GDVL++Q  +M R GF+AF   AD    + L
Sbjct: 83  FPKFRDGRAYTSARLLRERFGYQGHIRAVGDVLQEQAGFMVRCGFDAFEP-ADGATPEVL 141

Query: 146 -KGLTDFSEKYQTSWDEK 162
            K    F   YQ + D++
Sbjct: 142 TKAANRFRHVYQRAADDR 159


>RSc1863 [S] COG3749 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 169

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 5   AHIIKDKVVISDDWTVLRLNEGETPEGVAVPEGKIIVPLKVWQAQRGNLQGRPE-LGVWF 63
            +I+ D  V +D W    +  G   +     E    V L+ W   R   + R   + VW 
Sbjct: 13  CNILCDGRVTADTWRAYPVEHGNGDQVCPPDEAGYRVTLQNWMTHRRQYRRRRHPVAVWL 72

Query: 64  ASDERPEALKD------DLQPFKVIAVDFPKFADGRGYSIAYNLRARLGYTGELRAIGDV 117
           A D  P  L +      D     +IA+DFP + DGRGYSIA  LR  LG+ G LRA+GDV
Sbjct: 73  APDADPAGLLEPGATTIDPTGLAMIAIDFPVYTDGRGYSIAQLLRHPLGWQGALRAVGDV 132

Query: 118 LRDQLFYMQRVGFNAFAVR 136
           + D + Y+ R GF++FA++
Sbjct: 133 MIDTVHYLARCGFDSFALK 151