BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0088.p         (110 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0313 [E] COG0765 ABC-type amino acid transport system, permeas...   102   2e-22
SA1675_2 [E] COG0765 ABC-type amino acid transport system, perme...    88   5e-18
DR0565 [E] COG0765 ABC-type amino acid transport system, permeas...    87   1e-17
mlr0551 Non COG                                                        86   3e-17
lin0840_2 [E] COG0765 ABC-type amino acid transport system, perm...    85   3e-17

>PA0313 [E] COG0765 ABC-type amino acid transport system, permease
           component Pae Pseudomonas aeruginosa
          Length = 230

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 65/92 (70%)

Query: 17  VANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMRGAMEG 76
           +A VYVS  R TP L+Q F++Y+GL + G+E   +  G L LT N  AYLSE+MRGA+ G
Sbjct: 64  IAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILG 123

Query: 77  VSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           +  GQW AG S+GLT  QT+ +I+ PQALRLA
Sbjct: 124 IDKGQWEAGLSVGLTWGQTLWNIITPQALRLA 155


>SA1675_2 [E] COG0765 ABC-type amino acid transport system, permease
           component Sau Staphylococcus aureus N315
          Length = 205

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 3   VTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAA-GVELPLIVIGTLVLTAN 61
           V  ++  ++ +++ +A++Y+  +R TP L+Q F+V+FG+ AA G+++  +V GT+ L  N
Sbjct: 26  VALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVIN 85

Query: 62  AGAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALR 106
           + AY++E +R  +  V  GQ  A  SLGL   QT+  ++MPQA++
Sbjct: 86  SSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIK 130


>DR0565 [E] COG0765 ABC-type amino acid transport system, permease
           component Dra Deinococcus radiodurans
          Length = 226

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 69/106 (65%)

Query: 3   VTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANA 62
           V   R  R+  L  ++ ++VSF+R TP L+Q F++Y+GL + G++   +V G + LT NA
Sbjct: 45  VALARLSRLGWLRTLSGLFVSFIRGTPLLVQIFVIYYGLPSLGIQFSPVVGGVIALTLNA 104

Query: 63  GAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
            AYLSET+R A+  +  GQ  A  SLGL+  QT+  I++PQA R+A
Sbjct: 105 AAYLSETIRAAILSIPPGQREAATSLGLSGAQTMRLIILPQAARVA 150


>mlr0551 Non COG
          Length = 273

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 10/118 (8%)

Query: 1   MLVTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVI------- 53
           M V + R  R  +L+ +A  YV F R TP L+Q FL+Y+GLG+   EL +I +       
Sbjct: 82  MPVAYGRMSRNRILSGLAYCYVYFFRGTPLLVQTFLIYYGLGSFRPELQMIGLWDFFKDA 141

Query: 54  ---GTLVLTANAGAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
              G      N  AY +E +RGA+E V  GQW    SLGL + QT+  I++PQAL +A
Sbjct: 142 FNCGVFAFALNTAAYQAEILRGAIESVHRGQWEGAASLGLHKLQTLRKIILPQALIVA 199


>lin0840_2 [E] COG0765 ABC-type amino acid transport system, permease
           component Lin Listeria innocua
          Length = 212

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 5   FIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAA-GVELPLIVIGTLVLTANAG 63
           F++     +L  +A VYV   R TP ++QAF  YFG+ AA    +P+ + G + L+ NAG
Sbjct: 36  FMKVSNSKILRGIATVYVDIFRGTPLIVQAFFFYFGIPAALDFRMPVFLAGVIALSLNAG 95

Query: 64  AYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRL 107
           AY+ E +RG ++ V  GQ  A  SLGL   + +  +V+PQA+R+
Sbjct: 96  AYMVEIVRGGIQSVDKGQMEAARSLGLPHKKAMMKVVLPQAIRM 139