BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0078.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20658 [G] COG0395 ABC-type sugar transport system, permease c... 429 e-120 SMa0711 [G] COG0395 ABC-type sugar transport system, permease co... 179 6e-45 AGpA680 [G] COG0395 ABC-type sugar transport system, permease co... 165 1e-40 lin2970 [G] COG0395 ABC-type sugar transport system, permease co... 161 1e-39 mlr7227 [G] COG0395 ABC-type sugar transport system, permease co... 159 5e-39 >SMb20658 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 299 Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/296 (71%), Positives = 247/296 (83%), Gaps = 3/296 (1%) Query: 2 SKKSKD--LQQETQGMDFLQSVPRRWITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLR 59 + ++ D L +GM +L +PRR + Y+P+ +FVFVLLFPFYWM ITA KP+ +L Sbjct: 4 TTRTDDEVLTDTAEGMSYLNRLPRRIVVLYLPMAVFVFVLLFPFYWMAITAVKPNAQLTD 63 Query: 60 QTG-NPFWVVAPTLAHFKKLLFETQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRF 118 +PFWVV PTL H K LLFET YP WL NT++V+V ST SLAASVFAAYAIER+RF Sbjct: 64 YNNYSPFWVVRPTLDHIKYLLFETSYPGWLWNTMLVAVGSTILSLAASVFAAYAIERVRF 123 Query: 119 QGSKQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGY 178 G++ VGL IFLAYL+PPSILFIPLA IVFK G++D++ ALI TYPTFLIPFCTWLLMGY Sbjct: 124 TGARPVGLLIFLAYLVPPSILFIPLAFIVFKFGIYDSKLALIFTYPTFLIPFCTWLLMGY 183 Query: 179 FRSIPYELEECALIDGATRWEILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSS 238 FRSIP+ELEE AL+DGATRW+IL+KIILPLAVPGLISAGIFAFTLSWNEFIYALTFI SS Sbjct: 184 FRSIPFELEESALVDGATRWQILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFIQSS 243 Query: 239 EVKTVPVGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 294 E KTVPVG++TELV GDV+ WGALMAGAL GSLPV ++YSFFV+YYVS MTGAVKE Sbjct: 244 ENKTVPVGVLTELVRGDVFEWGALMAGALFGSLPVVILYSFFVDYYVSSMTGAVKE 299 >SMa0711 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 276 Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 161/279 (57%), Gaps = 5/279 (1%) Query: 18 LQSVPRRWITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLRQTGNPFWVVAPTLAHFKK 77 +Q + ++ Y L + VLLFP YW+ +TA E+ RQ FW P + F K Sbjct: 1 MQRTTLQTLSLYAGLAVVCGVLLFPIYWLFVTALSTLAEI-RQLPPSFWPAEPQWSTFAK 59 Query: 78 LLFETQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPS 137 + E WL N+ + ++ S S+ SVFA Y++ R +G + +GL I A ++P + Sbjct: 60 VGTERPIFLWLWNSTLAALGSVALSMVVSVFAGYSLSRFSVKGGRSLGLFILTAKMLPAT 119 Query: 138 ILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATR 197 +L IPL I +GL + W+L+L + T +IPF TW+L GYF +IP ELE+ A++DG + Sbjct: 120 LLVIPLFGIFRSMGLIGSLWSLVLAHATLIIPFTTWMLKGYFDTIPRELEQAAMVDGCSP 179 Query: 198 WEILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVK-TVPVGIVTELVDGD- 255 L +++LP+A PGL + ++AF LSW ++ YA TF+++++ T +GI T + G+ Sbjct: 180 LGALFRVVLPVATPGLAATALYAFVLSWADYAYARTFLTNAQGSWTANLGITT--MKGEY 237 Query: 256 VYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 294 V W + A A+ +LP+ ++Y F Y V G+T ++ Sbjct: 238 VTDWNEISAAAVFIALPIILIYLFLERYLVGGLTAGAEK 276 >AGpA680 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 277 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 152/264 (57%), Gaps = 6/264 (2%) Query: 34 IFVFVL-LFPFYWMVITAFKPDNELLRQTGNPFWVVAPTLAHFKKLLFETQYPAWLLNTV 92 IF V+ LFP YW+++TA +EL R FW P F ++ WL N++ Sbjct: 17 IFTLVMVLFPVYWLLVTALSTTDELYRLPPT-FWPDDPQWDIFARVWAAKPILLWLWNSM 75 Query: 93 IVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPLAAIVFKLGL 152 + ++ S S+ SV A YA+ R +G +GL + A ++P ++L IPL +I GL Sbjct: 76 LAAIGSVALSMLVSVSAGYALSRYSMRGGATMGLFVLTAKMLPATLLVIPLFSIFSSFGL 135 Query: 153 FDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILIKIILPLAVPG 212 + W L+L + T +IPF TW+L GYF +IP ELE+ A++DG + +++++LP+A PG Sbjct: 136 IGSLWTLVLAHSTMIIPFATWMLKGYFDTIPKELEQAAMVDGCSPIGAMVRVVLPIATPG 195 Query: 213 LISAGIFAFTLSWNEFIYALTF-ISSSEVKTVPVGIVTELVDGD-VYHWGALMAGALLGS 270 L + ++AF LSW ++ YA TF ++S + T +GI T + G+ V +W + A ++ + Sbjct: 196 LAATALYAFVLSWADYAYARTFLVNSPDNWTANLGITT--MQGEYVTYWNDISAASVFIA 253 Query: 271 LPVAVVYSFFVEYYVSGMTGAVKE 294 LP+ +Y F Y V G+T ++ Sbjct: 254 LPIIAIYLFLERYLVGGLTAGAEK 277 >lin2970 [G] COG0395 ABC-type sugar transport system, permease component Lin Listeria innocua Length = 283 Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 159/271 (58%), Gaps = 5/271 (1%) Query: 26 ITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLRQTGNPFWVVAPTLAHFKKLLFETQYP 85 I Y+ + F+ + LFPF M++T+FK E + T F+ T H+ + +P Sbjct: 14 IAFYVTMVAFLCITLFPFAIMLMTSFKSSKEAI-STHPTFFPKDFTFQHYIDIFNPDIFP 72 Query: 86 --AWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPL 143 + N+++VSV + ++ + AYA+ +LRF+G + + Y+ +L +PL Sbjct: 73 FLTYFKNSLVVSVFAAGIAVVLGILGAYALSKLRFKGRMTINASFYTVYMFSGILLIVPL 132 Query: 144 AAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILIK 203 I+ LGL+DT ALI+T +P ++L YF +IP ++EE A++DG R++I+++ Sbjct: 133 FKIISSLGLYDTETALIITMVVQTLPTAVFMLKSYFDTIPTDIEEAAMMDGLNRFQIILR 192 Query: 204 IILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGIVTELVDGDVYHWGALM 263 II+PLA+ G++S ++ F ++WN++++A F+SSSE T+P+G+ T D Y WG +M Sbjct: 193 IIVPLAISGIVSVFVYCFMVAWNDYLFASIFLSSSEKFTLPIGLNTLFSTPD-YIWGRMM 251 Query: 264 AGALLGSLPVAVVYSFFVEYYVSGMT-GAVK 293 A +L+ +LPV ++Y+ + +T G VK Sbjct: 252 AASLVTALPVVIMYAISERFIKGNLTDGGVK 282 >mlr7227 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 280 Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 146/255 (57%), Gaps = 7/255 (2%) Query: 42 PFYWMVITAFKPDNEL--LRQTGNPFWVVAPTLAHFKKLLFETQYPAWLLNTVIVSVVST 99 P YWM+ ++FK + E+ L T P A TL + +L + + N+ V+ T Sbjct: 30 PIYWMLSSSFKSNTEIFALPPTILP---KAFTLEAYAAILGDPVKLRFFFNSYFVAGTVT 86 Query: 100 FASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWAL 159 ++ ++ AAY R F+G + I IPP L IP +V G+FDT AL Sbjct: 87 VLTVLIALLAAYGFSRFNFRGKGSLNTLIISTQTIPPITLLIPFFGLVVSYGIFDTYVAL 146 Query: 160 ILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILIKIILPLAVPGLISAGIF 219 ILTY F +P+ L+ GY ++P +L+E +DG T W L ++I+P+++PG+++ ++ Sbjct: 147 ILTYLVFTLPYAILLMTGYLNTLPRDLDEAVAVDGGTSWTALWRVIVPISLPGIVATSVY 206 Query: 220 AFTLSWNEFIYALTFISSSEVKTVPVGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSF 279 F L WNEF++ALT S+ ++TVP+GI L+ + W +MA ++LGSLP+ ++Y Sbjct: 207 TFLLCWNEFLFALTLTKSTSMRTVPIGI-QLLMGQHAFEWNQMMAMSVLGSLPLLLIYLV 265 Query: 280 FVEYYVSGMT-GAVK 293 Y+++GMT G+VK Sbjct: 266 AQRYFLAGMTAGSVK 280