BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0041.p         (272 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1087 [KT] COG3437 Response regulator containing a CheY-like re...   133   4e-31
alr5251 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                       113   4e-25
all1703_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                     110   3e-24
PA2881 [T] COG0784 FOG Pae Pseudomonas aeruginosa                     110   5e-24
VC1086_1 [T] COG0784 FOG Vch Vibrio cholerae                          107   3e-23

>VC1087 [KT] COG3437 Response regulator containing a CheY-like receiver
           domain and an HD-GYP domain Vch Vibrio cholerae
          Length = 447

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 117/181 (64%), Gaps = 8/181 (4%)

Query: 13  TLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPGMTGVE 72
            +LL+DDE +IL AL R+LR D Y++VT +NG +ALE L+  P+ +I++D RMP M G +
Sbjct: 12  NVLLLDDENDILKALNRVLRMD-YNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGAD 70

Query: 73  FLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLR---GHVAEAFR 129
           FL  A+E  PDTVR++L+GY ++QS   AVN G ++ +++KPWD+  L+   G  AE +R
Sbjct: 71  FLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYR 130

Query: 130 ----RKEMADENLRLQQQLQMANLALEETNKELDKLLKVQEERIETDEVSLRIIHEILEH 185
               ++ +  E     ++L++AN AL E N +L +  +  E +++   V+L+  ++ LE 
Sbjct: 131 LSRDKERLTIELEERNKELEVANQALAENNHKLAQFNQELEAKVQERTVALQESNKRLES 190

Query: 186 L 186
           L
Sbjct: 191 L 191


>alr5251 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 315

 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 14  LLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKS-GPVDVIVTDQRMPGMTGVE 72
           +L+VDDE + L  L R  R+D ++++ A++G  ALE L + G V VI++DQRMP M G E
Sbjct: 26  ILVVDDEPDNLDLLYRTFRRD-FNVLKADSGLSALEVLAAEGEVAVIISDQRMPEMKGTE 84

Query: 73  FLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEA 127
           FL      +PDTVRI+L+G+T+++ + +A+N G VYK++TKPWD G+L+  V  A
Sbjct: 85  FLSKTVPQFPDTVRIILTGFTDIEDLVEAINAGQVYKYITKPWDPGELKAVVQRA 139


>all1703_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 159

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 14  LLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEAL-KSGPVDVIVTDQRMPGMTGVE 72
           L++VDDE + L  L R  R+D + +  AN+ ++ALE L + G + VI++DQRMP M G E
Sbjct: 11  LMVVDDEPDNLDLLYRTFRRD-FQVYKANHARKALEILAQEGEMAVIISDQRMPEMNGTE 69

Query: 73  FLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEA 127
           FL L  E +PDT+RI+L+G+T+++ + +A+N G V+K++TKPW+  +L+  V +A
Sbjct: 70  FLSLTVEKFPDTIRILLTGFTDVEDLVEAINSGQVFKYITKPWNPERLKNLVEQA 124


>PA2881 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 303

 Score =  110 bits (274), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 78/107 (72%), Gaps = 1/107 (0%)

Query: 10  SPRTLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPGMT 69
           SP  +L VDDE  IL +L    R+  Y+++T ++ + ALE LK+  + V+V+DQRMP M+
Sbjct: 4   SPVRILFVDDEERILRSLAMQFRR-HYEVLTESDPRRALERLKTERIQVLVSDQRMPQMS 62

Query: 70  GVEFLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWD 116
           G E L  A+E YP+T+RI+L+GY++L +  DA+N+G ++++LTKPW+
Sbjct: 63  GAELLAQARERYPETLRILLTGYSDLDAAVDALNDGGIFRYLTKPWN 109


>VC1086_1 [T] COG0784 FOG Vch Vibrio cholerae
          Length = 271

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 78/128 (60%)

Query: 9   RSPRTLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPGM 68
           +S R +LLVDDE  +L+ALKR LR     + TA   QEALE LK  PV ++++D RMPGM
Sbjct: 2   QSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGM 61

Query: 69  TGVEFLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEAF 128
            G + +      YP  + ++LSG  ++  ++ A+NEG +YKFL KPW+   L   + + F
Sbjct: 62  NGADLVIEINRRYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQCF 121

Query: 129 RRKEMADE 136
             KE  +E
Sbjct: 122 SEKERREE 129