BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0039.p (283 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0034 [T] COG1639 Predicted signal transduction protein Vch Vi... 128 2e-29 TM0854 [T] COG1639 Predicted signal transduction protein Tma The... 103 4e-22 PA0758 [T] COG1639 Predicted signal transduction protein Pae Pse... 77 4e-14 TP0073 Non COG 75 2e-13 PA5346_2 [T] COG1639 Predicted signal transduction protein Pae P... 69 1e-11 >VCA0034 [T] COG1639 Predicted signal transduction protein Vch Vibrio cholerae Length = 290 Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 7/219 (3%) Query: 16 LPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQSKIGSIPHA 75 LP L ++ EL+ + DVD H L++KI+ DQ LTA++LR+ANS+++G I ++ A Sbjct: 27 LPRLSKVLQELLDMANQPDVDFHQLSKKITLDQILTARLLRMANSAYFGGNGHIATVNDA 86 Query: 76 IAVLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALCSKVIAAHCNANQDQS 135 I +G SVR+LV+A+ + TF E LD +W + TAL + IA ++ ++ Sbjct: 87 IIRVGIESVRTLVVASVLSSTFPK--IETLDLNDYWTNTFETALIASKIAEQVGLDKSET 144 Query: 136 FIAGLLHNIGRLVLATCSPLRYRDVLQRCAQHNEDLLAAEIHVFGIDHKTAGKAVLEYWK 195 F G+LHNIG L++ T P + Q+ AQ D L+A+ V GI G + + WK Sbjct: 145 FTTGVLHNIGELMIHTLMPTEASLIQQKIAQ-GMDPLSAQEEVLGISAPRIGAMLAKEWK 203 Query: 196 FPAAIVGTLVSGKEESPAQGHAAAIAAVADAIAYALDLS 234 FP+ +V + E P + + AV AI +A D++ Sbjct: 204 FPSEMVDAIKHFDE--PREAEISPKLAV--AIHFARDIN 238 >TM0854 [T] COG1639 Predicted signal transduction protein Tma Thermotoga maritima Length = 285 Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 108/192 (56%), Gaps = 11/192 (5%) Query: 16 LPALPNIVLELIHALDNK-DVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQSKIGSIPH 74 LP+ PN+V++ I A+ +K D + +A + D +L+A+VL+LANS++YG+ KI ++ Sbjct: 16 LPS-PNVVVQRIIAVCSKPDASSTEVANTLMMDASLSARVLKLANSAYYGVPRKITTLSE 74 Query: 75 AIAVLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALCSKVIAAHCNAN-QD 133 A+ +LGF +VR+L L+ D ++ +D W+H I +A+ S+ +A ++ Sbjct: 75 AVMILGFKTVRNLALSVFTYDMVFKNSSSGIDREKLWEHFIASAIASETVAETMGYPLKE 134 Query: 134 QSFIAGLLHNIGRLVLATCSPLRYRDVLQ---RCAQHNEDLLAAEIHVFGI-DHKTAGKA 189 + FIAGLLH++G++V L + D+L+ + AQ + L GI H G Sbjct: 135 EIFIAGLLHDLGKVVYD----LLFSDILETEAKIAQKTKKNLIDIEEELGIPPHSEVGAK 190 Query: 190 VLEYWKFPAAIV 201 +L W FP +V Sbjct: 191 LLRKWNFPDLLV 202 >PA0758 [T] COG1639 Predicted signal transduction protein Pae Pseudomonas aeruginosa Length = 278 Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 92/204 (45%), Gaps = 21/204 (10%) Query: 6 EQDIADAV----LRLPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSS 61 +QD+ A+ L LP LP + L++ A ++ DV L++ I D LTA+++R+ NS Sbjct: 9 QQDLIRAIDQDELVLPTLPEVALQVREAAEDPDVSIQALSKVIGNDAALTARIIRVVNSP 68 Query: 62 FYGMQSKIGSIPHAIAVLGFNSVRSLVLAAAVVDTF-ANHAGEDLDHAHFWKHAIGTALC 120 +I + AI+ LG N +L A+ F A D W + A Sbjct: 69 LLRSPKEITDLQMAISRLGINYTCNLATGLAMEQMFQATTDVVDRKMREVWNKSTEIAGI 128 Query: 121 SKVIAAH-CNANQDQSFIAGLLHNIGRLVLATCSPLRYRDVLQRCAQHNEDLLAAEI--- 176 V+A H DQ+ +AGL+H IG L +L HNE LL+ I Sbjct: 129 CHVLARHYTRLAPDQATLAGLVHQIGVL-----------PILTYAEDHNE-LLSDSISLS 176 Query: 177 HVFGIDHKTAGKAVLEYWKFPAAI 200 HV H G+ +L+ W FPA I Sbjct: 177 HVIERIHPLIGERILKAWDFPAPI 200 >TP0073 Non COG Length = 513 Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 11/201 (5%) Query: 9 IADAVLRLPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQSK 68 IAD + +P LP+ +LE+ A++N DV + IS D L +L+L NS+ +GM + Sbjct: 247 IADRIDDIPQLPSKLLEIQRAIENPDVQLSDIVALISQDVALVTDLLKLVNSARFGMNKR 306 Query: 69 IGSIPHAIAVLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALCSKVIAAHC 128 I A+ +G +++L+ + + D + W A T + +A Sbjct: 307 CLDISEAVKRVGLRGLQNLLYSVGAGRVLQS---TDDERKQLWNQAYRTGYFALGLA--- 360 Query: 129 NANQDQ-----SFIAGLLHNIGRLVLATCSPLRYRDVLQRCAQHNEDLLAAEIHVFGIDH 183 A DQ S+I GLLHN+G +V + P + + A+ N + + + H Sbjct: 361 KATGDQALIADSYICGLLHNLGEVVFTSAYPEMLIKLTEIQAERNIPPHVLDTIMSDVGH 420 Query: 184 KTAGKAVLEYWKFPAAIVGTL 204 G A+ + W P ++ T+ Sbjct: 421 AEIGAALAQRWNLPEPVINTI 441 >PA5346_2 [T] COG1639 Predicted signal transduction protein Pae Pseudomonas aeruginosa Length = 293 Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 8/198 (4%) Query: 7 QDIADAVLRLPALPNIVLELIHALDNKDVDTHTLAQKISYDQTLTAKVLRLANSSFYGMQ 66 Q + + +P LP ++I + + + + D L A+V+ A S +Y Sbjct: 10 QQRLEQTIEIPPLPQTAQKIIKLRVDPNASVDDITGLVETDPALAAQVVSWAASPYYAAP 69 Query: 67 SKIGSIPHAIA-VLGFNSVRSLVLAAAVVDTFANHAGEDLDHAHFWKHAIGTALC----S 121 KI S+ AI VLGF+ V +L L A+ + + + +W+ AI TA + Sbjct: 70 GKIRSVEDAIVRVLGFDLVINLALGLALGKSLSLPKDQPQQATPYWQQAIYTAAVIEGLT 129 Query: 122 KVIAAHCNANQDQSFIAGLLHNIGRLVLATCSPLRYRDVLQRCAQHNEDLLAAEI--HVF 179 + + S++ GLLHN G LVLA P + ++ R + N L A I H+ Sbjct: 130 RAMPRELRPESGLSYLGGLLHNFGYLVLAHVFPPHF-SLICRHLEVNPHLGHAYIEQHLL 188 Query: 180 GIDHKTAGKAVLEYWKFP 197 GI + G ++ W P Sbjct: 189 GITREQIGAWLMRVWDMP 206