BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0029.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2115 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 234 1e-61 SMa0498 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 121 2e-27 YPO1934 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 108 2e-23 PA2497 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 98 3e-20 RSc1094 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 95 2e-19 >PA2115 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 317 Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 186/300 (62%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 MN++FLETFVW+A+LK+FRLTAE+L +TQA++SSRIA LE + GV+LF R +R VTLT + Sbjct: 1 MNLKFLETFVWVARLKSFRLTAEKLFSTQASISSRIAVLEDELGVKLFVRDSRGVTLTPE 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 G K L YAERM+ M +K + G IRIG +++++H+W + RV + FP ++ Sbjct: 61 GDKVLAYAERMMDTMHALKQSLDTGASTQGRIRIGAMDTVIHTWLSPLVARVTETFPAVE 120 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 IE+ +DT +L EQ KG LD++ Q + + + N+ L +P+RW+ S + S Sbjct: 121 IELMADTARNLSEQLQKGYLDLIFQTDSLRHESVLNLELGSYPLRWIVSTGSIYHRDYAS 180 Query: 181 LSDLATFPIISFARNSGPHAVIERLFSGSERGALHVNCIASVATMIRLVTDGFGVAAVPP 240 L+DLA +++F+++S PH + L + A +NC+ SVA M RL+ DGFGV A+PP Sbjct: 181 LADLARERVVTFSKHSRPHQDVLGLLHANGVAAPRLNCVNSVAAMTRLLRDGFGVGALPP 240 Query: 241 AIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQETAADFALNWGQE 300 A++ +EL L LR+ P L ++ +R L + V +++ AD+A N G E Sbjct: 241 ALVSQELERGELTLLRLGPPPPNLPVVVSWRGGTGLELVDEVVELSKAVLADYAANVGPE 300 >SMa0498 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 299 Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 5/289 (1%) Query: 1 MNIRF--LETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLT 58 M + F LE+F W+++L++F A +L+ +Q VS RI LE+ GV LF R R++ LT Sbjct: 1 MTLSFSALESFYWVSQLRSFNAAANKLNVSQPTVSYRIRELEERLGVSLFVRQRRQLVLT 60 Query: 59 TDGSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPR 118 ++G YAE M+ + R+++ ++ + +R+GVI+S P L + F Sbjct: 61 SEGEALKHYAESMIAIARDIESNIKTRNTRLPTLRVGVIDSFAAVCLPSLLDELDIRFAG 120 Query: 119 LQIEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSET 178 +I DT+ L +Q S+G LDI + + P ++ L + W+ S KL + Sbjct: 121 ARIAATVDTSHKLADQLSEGLLDIAVLSTPPSHDNVALELLGRQSVDWIASHKLGLPQTI 180 Query: 179 LSLSDLATFPIISFARNSGPHAVIERLFSGSERGALHVNCIASVATMIRLVTDGFGVAAV 238 +S +L I + S H++ + + L +N S+ T++ LV G G++ + Sbjct: 181 VSDEELLRQRIFATPAPSNLHSLTTGFLAATAGAGLRLNVCNSLGTILNLVESGTGISIL 240 Query: 239 PPAIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQ 287 P ++Q ++ + L+ P + F N+ + + +++Q Sbjct: 241 PSRLLQEQIRHGTIQVLKTRTTLP---LQEVFIGTNKGAIVRALPQVSQ 286 >YPO1934 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 320 Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 9/300 (3%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 M ++ LE F W A+ NF + AERLH + +++S RI LE G LFDR LT Sbjct: 1 MTLKQLEAFYWAARCSNFSIAAERLHISISSLSKRIVELEASLGCTLFDRSGYRAVLTET 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 G L A +++ E+++ + + +G+ GV E +W P F+ ++P+L Sbjct: 61 GQNLLPRAFALLESAAEIRNTLGASEGLSGICNFGVGELSALTWLPSFIASARLLYPKLL 120 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 + D L + +KG +D + A +I ++ + + W+ SP L + T+ Sbjct: 121 LAPHVDVGAALEGRVNKGEMDFAIIAGRSSRQNILSLPIAQAQFVWMASPTL---ANTVG 177 Query: 181 LSDLA---TFPIISFARNSGPHAVIER-LFSGSERGALHVNCIASVATMIRLVTDGFGVA 236 +D A P+I+ +G +I+ L + +NC S ++ ++ G+ Sbjct: 178 TADSALRQALPLITLPPGAGSSRIIDAWLMAYGIASVARINC-NSWGAIVGMLIASVGIG 236 Query: 237 AVPPAIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQETAADFALN 296 +P + ++ L L AL +R D+ PL + R+ ADF+LN Sbjct: 237 ILPTSWAEKLSLHNQLEYLPCSEPLAALNYSFQWRRDDPRPLIRKM-RVLVADLADFSLN 295 >PA2497 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 292 Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 9/247 (3%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 +++ L TFV + NF E LH TQ+ VS ++ LEQ+ G RL DR R+V T + Sbjct: 2 LDLVLLRTFVSVVDTGNFTRAGEHLHLTQSTVSQQVIRLEQNLGCRLLDRSQRQVLPTEE 61 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 G + L YA R+++L E + +S GV+R+GV E + L R + PRL+ Sbjct: 62 GERLLGYARRLLRLSDEASEALSPAH-GDGVLRLGVPEDLAGEVLMPVLTRFTEERPRLR 120 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 +E+ S + HL + G LD++L + G P+ W GS G + Sbjct: 121 LEVESGLSHHLLRLYRSGELDLLLVKQ--WGADSDCHARWAEPLGWFGSAARPFGEGSPE 178 Query: 181 LS-DLATFPIISFARNSGPHAVIERLFSGSERGALHVNCIASVATMIRLVTDGFGVAAVP 239 L FP+ + R HA L S R + + AS+A+++ V G GV+ +P Sbjct: 179 EPVPLVVFPVGALYRQEMIHA----LESIGRRWRIGYSS-ASLASLVAAVGAGLGVSLLP 233 Query: 240 PAIIQRE 246 + E Sbjct: 234 LGCVGPE 240 >RSc1094 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 311 Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 13/244 (5%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 M++R L T V + F E + TQ+AVS ++ LE +FGVRLFDR R+ LT Sbjct: 13 MSLRALRTLVAIVHHGTFARAGEAIGLTQSAVSLQVKALEDEFGVRLFDRSRRQPALTEA 72 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 G L AE+++ L + D +SD++ G +RIG I++ + PD L + + P L+ Sbjct: 73 GRIVLAQAEQILALYDHIPDSLSDEKALVGRLRIGAIQTALSGPLPDALLALRRDHPLLR 132 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPV--PGTHITNINLCEFPMRWVGSPKLNIGSET 178 + +A+ + L ++ + G LD + ++PV +T L E W+ +P + + Sbjct: 133 VHVAAGMSAELAQRVAAGELDAAITSQPVRPHPAELTWTTLYEDRF-WLLAPPQHANHDA 191 Query: 179 LSLSDLATFPIISFARNSGPHAVIERLFSGS-ERGALHVN---CIASVATMIRLVTDGFG 234 L L P I F A R+ + R + V + S ++R+V G G Sbjct: 192 RKL--LEELPFIRF----DAQAWAGRMIAAELRRLGVRVREEMVLDSQEAIVRMVASGLG 245 Query: 235 VAAV 238 A V Sbjct: 246 AAIV 249