BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0021.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 491 e-139 Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transp... 461 e-129 ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 461 e-129 yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 460 e-129 STM0851 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 427 e-119 >RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 299 Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust. Identities = 237/301 (78%), Positives = 270/301 (89%), Gaps = 2/301 (0%) Query: 1 MSTSITPAANTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPY 60 M+ + +PA + AS+P+RTPWSEFWRKFRKQ LAL AG FV+ LVV AI++P++ P+ Sbjct: 1 MTQASSPA--VIPQAASEPVRTPWSEFWRKFRKQHLALGAGVFVIALVVAAILAPHLVPF 58 Query: 61 DAENYFDYDALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLG 120 D ENYFDYDALNAGPS AHWFGVDSLG DIFSRIL+GT++SL GF SV +GA++GT LG Sbjct: 59 DPENYFDYDALNAGPSAAHWFGVDSLGRDIFSRILMGTRISLEAGFVSVVIGALIGTVLG 118 Query: 121 LVAGYYEGWADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLV 180 L+AGYYEGW DR++MRICDVLFAFPGILLAI IVAILGNGM NVI AVA+FS+PAFARLV Sbjct: 119 LLAGYYEGWWDRIVMRICDVLFAFPGILLAIGIVAILGNGMANVIFAVAVFSVPAFARLV 178 Query: 181 RGNTLSLKQLTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFL 240 RGNTL LK LTY+EA RSIGA+D TI+LRHI PGTISS+VVYF+MRIGTSIITAASLSFL Sbjct: 179 RGNTLMLKHLTYVEAARSIGASDRTILLRHILPGTISSIVVYFSMRIGTSIITAASLSFL 238 Query: 241 GLGAQPPTPEWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLDQ 300 GLGAQPPTPEWGAMLNEARADM+TAPH+AIFPSLAIFLTVLAFNLLGDGLRDALDPK+D+ Sbjct: 239 GLGAQPPTPEWGAMLNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDR 298 Query: 301 K 301 + Sbjct: 299 R 299 >Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust. Identities = 219/290 (75%), Positives = 255/290 (87%) Query: 10 NTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPYDAENYFDYD 69 N + +RTPW EFWR+FR+Q +A+ A FV+ L+V+AI + +I+PYDAENYFDYD Sbjct: 13 NAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYD 72 Query: 70 ALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLGLVAGYYEGW 129 LN GPSL HWFGVDSLG DIFSR+LVG Q+SLA G +V +GA +GT LGL+AGYYEGW Sbjct: 73 NLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGW 132 Query: 130 ADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLVRGNTLSLKQ 189 DR+IMRICDVLFAFPGILLAIA+VA+LG+G+ NVIIAVAIFSIPAFARLVRGNTL LKQ Sbjct: 133 WDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQ 192 Query: 190 LTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFLGLGAQPPTP 249 T+IE+ RSIGA+DMTI+LRHI PGT+SS+VV+FTMRIGTSII+AASLSFLGLGAQPPTP Sbjct: 193 QTFIESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTP 252 Query: 250 EWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLD 299 EWGAMLNEARADM+ APH+A+FP+LAIFLTVLAFNLLGDGLRDALDPK+ Sbjct: 253 EWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Ecs Escherichia coli O157:H7 Length = 303 Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust. Identities = 219/290 (75%), Positives = 255/290 (87%) Query: 10 NTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPYDAENYFDYD 69 N + +RTPW EFWR+FR+Q +A+ A FV+ L+V+AI + +I+PYDAENYFDYD Sbjct: 13 NAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYD 72 Query: 70 ALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLGLVAGYYEGW 129 LN GPSL HWFGVDSLG DIFSR+LVG Q+SLA G +V +GA +GT LGL+AGYYEGW Sbjct: 73 NLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGW 132 Query: 130 ADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLVRGNTLSLKQ 189 DR+IMRICDVLFAFPGILLAIA+VA+LG+G+ NVIIAVAIFSIPAFARLVRGNTL LKQ Sbjct: 133 WDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQ 192 Query: 190 LTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFLGLGAQPPTP 249 T+IE+ RSIGA+DMTI+LRHI PGT+SS+VV+FTMRIGTSII+AASLSFLGLGAQPPTP Sbjct: 193 QTFIESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTP 252 Query: 250 EWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLD 299 EWGAMLNEARADM+ APH+A+FP+LAIFLTVLAFNLLGDGLRDALDPK+ Sbjct: 253 EWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Eco Escherichia coli K12 Length = 303 Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust. Identities = 218/290 (75%), Positives = 255/290 (87%) Query: 10 NTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPYDAENYFDYD 69 N + +RTPW EFWR+FR+Q +A+ A FV+ L+V+AI + +I+PYDAENYFDYD Sbjct: 13 NAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYD 72 Query: 70 ALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLGLVAGYYEGW 129 LN GPSL HWFGVDSLG DIFSR+LVG Q+SLA G +V +GA +GT LGL+AGYYEGW Sbjct: 73 NLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGW 132 Query: 130 ADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLVRGNTLSLKQ 189 DR+IMRICDVLFAFPGILLAIA+VA+LG+G+ NVIIAVAIFSIPAFARLVRGNTL LKQ Sbjct: 133 WDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQ 192 Query: 190 LTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFLGLGAQPPTP 249 T+IE+ RSIGA+DMT++LRHI PGT+SS+VV+FTMRIGTSII+AASLSFLGLGAQPPTP Sbjct: 193 QTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTP 252 Query: 250 EWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLD 299 EWGAMLNEARADM+ APH+A+FP+LAIFLTVLAFNLLGDGLRDALDPK+ Sbjct: 253 EWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >STM0851 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sty Salmonella typhimurium LT2 Length = 303 Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/284 (76%), Positives = 254/284 (89%), Gaps = 2/284 (0%) Query: 18 KP--IRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPYDAENYFDYDALNAGP 75 KP IRTPW EFWR+FR+Q +AL AG FVL L+++AI + +++PYDAENYFDYD+LN GP Sbjct: 19 KPDQIRTPWREFWRRFRRQHVALVAGGFVLALILVAIFARWLTPYDAENYFDYDSLNNGP 78 Query: 76 SLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLGLVAGYYEGWADRVIM 135 SL HWFGVDSLG DIFSR+LVG Q+SLA G +V +GAI+GT LGL+AGYYEGW DR IM Sbjct: 79 SLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAIIGTVLGLLAGYYEGWWDRFIM 138 Query: 136 RICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLVRGNTLSLKQLTYIEA 195 RICDVLFAFPGILLAIA+VA+LG+G+ NVI+AVAIFSIPAFARLVRGNTL LKQ T+IE+ Sbjct: 139 RICDVLFAFPGILLAIAVVAVLGSGIANVIVAVAIFSIPAFARLVRGNTLVLKQQTFIES 198 Query: 196 VRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAML 255 RSIGA+D TI+ HI PGT+SS+VV+FTMRIGTSII+AASLSFLGLGAQPPTPEWGAML Sbjct: 199 ARSIGASDTTILFSHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAML 258 Query: 256 NEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLD 299 NEARADM+ APH+A+FP++AIFLTVLAFNLLGDGLRDALDPK+ Sbjct: 259 NEARADMVIAPHVALFPAVAIFLTVLAFNLLGDGLRDALDPKIK 302