BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0014.p (313 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02323 [KG] COG1349 Transcriptional regulators of sugar metabo... 262 9e-70 mll5707 Non COG 256 4e-68 AGl2687 [KG] COG1349 Transcriptional regulators of sugar metabol... 234 2e-61 VCA0247 [KG] COG1349 Transcriptional regulators of sugar metabol... 147 3e-35 mll3600 Non COG 142 1e-33 >SMc02323 [KG] COG1349 Transcriptional regulators of sugar metabolism Sme Sinorhizobium meliloti Length = 270 Score = 262 bits (669), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 131/265 (49%), Positives = 186/265 (70%), Gaps = 3/265 (1%) Query: 46 MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105 M +R + +LS + E A+V +L +S AT+RRDI+ L + L R+RGGAE + Sbjct: 1 MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAIN 60 Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165 P + L+G F+ + EK+AIAR A +C+DGE +IINGGTTTF M FLA+++ Sbjct: 61 PPQ-FVGLAGRPFRVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRR 119 Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225 +++ TNSF +AE LL S+N +++ GG +YREQN+ILSPF+ND+T++ YA +MFMG GL Sbjct: 120 MQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFENDVTRNFYARRMFMGAQGL 179 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 LGLME DPLLIQAE++L+ QA+ L+VLVDSSKF R++ LILCGL R++ +ITD+G+ D Sbjct: 180 GPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDSGIED 239 Query: 286 AAVQMMEQAGVK--VAAVAPESELE 308 M+E AGV VAA + +++ E Sbjct: 240 RHASMLENAGVSLIVAAQSAKADAE 264 >mll5707 Non COG Length = 267 Score = 256 bits (655), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 125/251 (49%), Positives = 177/251 (70%), Gaps = 1/251 (0%) Query: 46 MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105 M +R + +LS + E +V+++ +S AT+RRDI+ L + L R+RGGAE ++ Sbjct: 1 MHEKERHRIILSAVQEKPVVTVQEMVDLTESSEATIRRDIAALHVQKRLRRVRGGAEAIS 60 Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165 P + L+G F + ++KRAIAR A +C DGE +IINGGTTTF M FL ++ Sbjct: 61 PPQ-FIGLAGRPFSVNETINASQKRAIAREAVELCGDGEPIIINGGTTTFQMVHFLTGRR 119 Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225 + I TNSF +AE LL S+N +++ GG +YREQN+ILSPFDND+T++ YA +MFMG GL Sbjct: 120 MPIFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFDNDVTRNFYARRMFMGAQGL 179 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 LGLME DPLLIQAE++L+ QA++L+VLVDSSKF +++ LILCGL+R++ +ITD G+ D Sbjct: 180 GPLGLMEGDPLLIQAEQKLIDQADELVVLVDSSKFRKRSSLILCGLSRIATVITDDGIED 239 Query: 286 AAVQMMEQAGV 296 +M+E AGV Sbjct: 240 REAKMLETAGV 250 >AGl2687 [KG] COG1349 Transcriptional regulators of sugar metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 276 Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/253 (45%), Positives = 177/253 (69%), Gaps = 1/253 (0%) Query: 46 MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105 M +R + +LS E A +V+ + + +AS AT+RRDI+ L + L R+RGGAE + Sbjct: 1 MHERERHRIILSATQEKAVVTVQDIAELTDASEATIRRDIASLHVQGKLRRVRGGAEAVH 60 Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165 P + +L+ F+ S +KRAIAR A +C DG+ +I+NGGTTTF M ++A ++ Sbjct: 61 PPQLG-NLAARPFRVSESVNIDKKRAIARKAVDLCNDGDAIILNGGTTTFQMVHYMAARR 119 Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225 L+++TNSF +AE L+ S+ + VPGG +YR+Q++ILSPF+ND ++ YA ++F+G G+ Sbjct: 120 LQVMTNSFAIAEHLVKHSKCNVNVPGGAIYRDQSLILSPFENDAIRNFYARRIFLGAQGV 179 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 LG+ME D L+IQ+E++L+ QAE+LIV+VDSSKF +++ LILC L V+ +ITD G+SD Sbjct: 180 GALGIMESDALVIQSEQKLMRQAEELIVMVDSSKFRKRSSLILCPLENVTTIITDDGISD 239 Query: 286 AAVQMMEQAGVKV 298 A +M+E AGV++ Sbjct: 240 EAARMVENAGVEL 252 >VCA0247 [KG] COG1349 Transcriptional regulators of sugar metabolism Vch Vibrio cholerae Length = 251 Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 145/253 (57%), Gaps = 7/253 (2%) Query: 50 KRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLAPKRN 109 +R +LSLL E+ +V + + N S AT RRDI+ L E L ++R GAER+ ++ Sbjct: 5 QRHNGILSLLEENQAINVSHIIERFNVSPATARRDIAKLDELGKLRKVRNGAERIENQKR 64 Query: 110 AFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQLKIL 169 +S NS E + EK IA AA +C+ G++V+IN G+T F++ + L + ++I+ Sbjct: 65 KWS---PLNINSTEHYE-EKSLIALKAAELCQPGDSVVINCGSTAFLLGQQLCGENVQIV 120 Query: 170 TNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGK-MFMGVYGLSML 228 TN F +A L+ + +I+ GGQ R Q++ L+P + + YAG MF GL+ Sbjct: 121 TNYFPLASYLINEDHDDVIIIGGQYNRAQSIFLNPAPDSLG--GYAGNWMFTSGKGLTEA 178 Query: 229 GLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSDAAV 288 GL + D L AE+++L Q ++L+V+VDSSK ++ G++ C +++ +IT + V Sbjct: 179 GLYKTDMLTAVAEQQMLEQIDKLVVVVDSSKVGQRTGMLFCSTSKIDIVITGKNANAEVV 238 Query: 289 QMMEQAGVKVAAV 301 + +E G +V V Sbjct: 239 KAIEAQGTQVILV 251 >mll3600 Non COG Length = 267 Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 137/253 (54%), Gaps = 13/253 (5%) Query: 51 RRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLAPKRNA 110 R+++++ LL + ASV +L + L SAATVRRDI + E ++ GG L +A Sbjct: 13 RQRQIVELLRDRPFASVRELQERLGVSAATVRRDIDRIDEAGEARKVYGGISALDGASHA 72 Query: 111 FSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQLKILT 170 + + + KR IA AA M DG+ VI++GG+T F + LA + +++ T Sbjct: 73 GVAYARPYDENRDLAVEAKRQIAAIAATMVRDGDAVIVHGGSTCFHLGVKLAERNIRLYT 132 Query: 171 NSFLMAERLLTTSENQIIVPGGQVYREQNVILS-----PFDNDITQHHYAGKMFMGVYGL 225 NS +A L + V GG+++RE +I S PF YA K F+G GL Sbjct: 133 NSMPLAAYLSDHGYCSLTVAGGELHREPGIIHSLTQATPF--------YASKFFLGAQGL 184 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 + G++E PLL+++ L A+Q++VL DS K S A + L+R+ LITD G+SD Sbjct: 185 NQEGVLESHPLLVRSIVDLSLCADQIVVLADSRKLSIHARNVALPLSRIGTLITDDGLSD 244 Query: 286 AAVQMMEQAGVKV 298 A +M+E AGV V Sbjct: 245 ADARMLEDAGVMV 257