BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0214.p         (179 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1223 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   199   2e-51
RSc0144 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   121   8e-28
RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...    99   5e-21
SMa1956 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ...    98   1e-20
mll4435 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...    97   1e-20

>PA1223 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 297

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 115/142 (80%)

Query: 38  DDAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDAL 97
           ++APPG+R R LF ERYVL GR+GHP LRR+PT  QFC LE  IVSPDGGGF G TD AL
Sbjct: 156 EEAPPGLRCRRLFSERYVLAGRAGHPGLRRRPTLKQFCRLEQAIVSPDGGGFLGPTDQAL 215

Query: 98  AAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQVVEPPFDVAGYDMAML 157
           A  G  RRV LSVPHFLF+ +VL +TD+VA++PSRL+R    L+VVE P +V+GYD+AML
Sbjct: 216 AELGAERRVALSVPHFLFLRAVLESTDLVALLPSRLVRERDRLRVVEAPLEVSGYDLAML 275

Query: 158 WHERSHRDPAHQWLRDHLAASV 179
           WHERSHRDPAH+WLR+ +AASV
Sbjct: 276 WHERSHRDPAHRWLRELIAASV 297


>RSc0144 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 321

 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 38  DDAPPGMRQRVLFRERYVLVGRSGHPKLRR-KPTPAQFCALEHVIVSPDGGGFRGVTDDA 96
           D  P  +  R LF ERYV   R  HP  R  + +  +FCAL+H +VS  GGGF GVTD+A
Sbjct: 155 DSTPADLYARHLFEERYVCALRRDHPDARDGRLSLDRFCALDHALVSYVGGGFAGVTDEA 214

Query: 97  LAAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQVVEPPFDVAGYDMAM 156
           LA  G TRRV LSV  FL +  +L  +D+VA+VP RL+     L +++PP ++ G+   +
Sbjct: 215 LARLGRTRRVTLSVGSFLILPEILRASDLVAVVPRRLVAQVEGLALLDPPIEIPGFTKVV 274

Query: 157 LWHERSHRDPAHQWLR 172
            WH R+HR P H+WLR
Sbjct: 275 AWHARTHRHPGHRWLR 290


>RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 300

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 6/141 (4%)

Query: 39  DAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDALA 98
           D   G  QR LFR+RYV + R GHP  +R  T   F   EHV +  +G G  G+ D  + 
Sbjct: 156 DLKSGFFQRRLFRQRYVCLFRKGHPLAKRGMTMEGFLEAEHVSIVAEGTG-HGMVDATIL 214

Query: 99  AAGLTRRVVLSVPHFLFMMSVLANTDMVAMVP----SRLMRGSAALQVVEPPFDVAGYDM 154
            AGL RRV L VPHF+ +  +L +TD++A+VP    +R ++    L     P  +    +
Sbjct: 215 RAGLPRRVSLHVPHFIALGHILQSTDLIAVVPQAYATRTLK-PFGLDTAACPVKIPDITI 273

Query: 155 AMLWHERSHRDPAHQWLRDHL 175
            +LWH R+HR+P +QWLR  L
Sbjct: 274 NVLWHARNHREPGNQWLRQLL 294


>SMa1956 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 310

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 4/145 (2%)

Query: 38  DDAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDAL 97
           +DAP G+++R L+++ +V + R+ HP   RK T  +F  L+HV+VS  G G R   D+ L
Sbjct: 162 EDAPAGVKKRKLYQDNFVTLMRAEHPTAARKLTLERFLELDHVVVSITGTG-RAWVDEIL 220

Query: 98  AAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQ---VVEPPFDVAGYDM 154
           A +G  RRV + VP F   + + A +D+V  +PS L R +A ++   +  PP D+    +
Sbjct: 221 ARSGRKRRVKVRVPSFFAAVEIAARSDLVMTLPSSLARTAADMRRFVMASPPLDLGSVVI 280

Query: 155 AMLWHERSHRDPAHQWLRDHLAASV 179
           ++ WH R    P H WLR  +AA+V
Sbjct: 281 SLAWHARHQDAPRHVWLRRTIAAAV 305


>mll4435 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 304

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 74/140 (52%), Gaps = 1/140 (0%)

Query: 41  PPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDALAAA 100
           PP ++ R ++ E Y +  R  HP+     +   +CAL+HV+VS  GG + G  D ALA  
Sbjct: 161 PPFLKARRIYDEVYAMAQRRDHPRGTEPLSLDGYCALDHVLVSLKGGLYEGRVDQALAKL 220

Query: 101 GLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRG-SAALQVVEPPFDVAGYDMAMLWH 159
           G  RRV LS+P+F  +  VL  TD V  +P+R  +     L V E PF V G+ M M WH
Sbjct: 221 GRNRRVRLSLPNFTSVPQVLQATDYVCTMPARFAKSLKDELDVFELPFAVPGFAMHMAWH 280

Query: 160 ERSHRDPAHQWLRDHLAASV 179
            R   D A  WLR  +   V
Sbjct: 281 PREQSDAAQSWLRTQVLEVV 300