BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0200.p         (169 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0589 [H] COG0054 Riboflavin synthase beta-chain Bme Brucell...   177   8e-45
mll7281 [H] COG0054 Riboflavin synthase beta-chain Mlo Mesorhizo...   175   3e-44
SMc01609 [H] COG0054 Riboflavin synthase beta-chain Sme Sinorhiz...   166   2e-41
XF0954 [H] COG0054 Riboflavin synthase beta-chain Xfa Xylella fa...    78   9e-15
CC0888 [H] COG0054 Riboflavin synthase beta-chain Ccr Caulobacte...    77   2e-14

>BMEII0589 [H] COG0054 Riboflavin synthase beta-chain Bme Brucella melitensis
          Length = 158

 Score =  177 bits (450), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 101/145 (69%)

Query: 14  RIAFIQASWHKEIVDQCRISFTAEIVKLGFAESSIDFFELPGAFEIPLHAKLLAKTGKYA 73
           +IAFIQA WH +IVD+ R SF AE+         ++ F++PGA+EIPLHAK LA+TG+YA
Sbjct: 12  KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYA 71

Query: 74  GIVAAGLVVDGGIYRHDFVAQAVITSLMNVQLETEVPVFSAVLTPHHFHSHGEHQQFFQE 133
            IV A  V+DGGIYRHDFVA AVI  +M VQLETEVPV S VLTPHHFH   EH  FF  
Sbjct: 72  AIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHA 131

Query: 134 HFVVKGQEVARACADTVVKVARIEA 158
           HF VKG E A A    V + +RI A
Sbjct: 132 HFKVKGVEAAHAALQIVSERSRIAA 156


>mll7281 [H] COG0054 Riboflavin synthase beta-chain Mlo Mesorhizobium loti
          Length = 157

 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 105/145 (72%)

Query: 14  RIAFIQASWHKEIVDQCRISFTAEIVKLGFAESSIDFFELPGAFEIPLHAKLLAKTGKYA 73
           RIA ++A WH +IVDQC  +F AE+  +G    ++D F++PGA+EIPLHA+ LA+TG+Y 
Sbjct: 13  RIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYG 72

Query: 74  GIVAAGLVVDGGIYRHDFVAQAVITSLMNVQLETEVPVFSAVLTPHHFHSHGEHQQFFQE 133
            ++    VV+GGIYRH+FVA AVI  +MNVQL T VPV SAVLTPH++H   EH +FF E
Sbjct: 73  AVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRFFFE 132

Query: 134 HFVVKGQEVARACADTVVKVARIEA 158
           HF VKG+E ARAC + +    +I A
Sbjct: 133 HFTVKGKEAARACVEILAAREKIAA 157


>SMc01609 [H] COG0054 Riboflavin synthase beta-chain Sme Sinorhizobium
           meliloti
          Length = 175

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 111/161 (68%), Gaps = 10/161 (6%)

Query: 1   MQHPSSNTSSARNRIAFIQASWHKEIVDQCRISFTAEIVKLGFAESSIDFFELPGAFEIP 60
           + HPS+       +IA ++A WH +IVD+C  +F A+  KLG + + ++ F++PGA EIP
Sbjct: 22  LSHPSA-------KIAIVRARWHADIVDRCVDAFVAQWTKLGGSAADVEIFDVPGALEIP 74

Query: 61  LHAKLLAKTGKYAGIVAAGLVVDGGIYRHDFVAQAVITSLMNVQLETEVPVFSAVLTPHH 120
           LHA+ LA+TG+YA I+    VV+GGIYRHDFV+  V+  +M VQL+T+VPV SAVLTPH+
Sbjct: 75  LHAQALARTGRYAAILGTAFVVNGGIYRHDFVSGTVLDGMMRVQLDTDVPVLSAVLTPHN 134

Query: 121 FHSHGEHQQFFQEHFVVKGQEVARACA---DTVVKVARIEA 158
           F        FF++HFVVKG+E A ACA   D   K+A ++A
Sbjct: 135 FQESEPLIAFFRDHFVVKGEEAANACAQILDARAKLALVDA 175


>XF0954 [H] COG0054 Riboflavin synthase beta-chain Xfa Xylella fastidiosa
           9a5c
          Length = 154

 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%)

Query: 1   MQHPSSNTSSARNRIAFIQASWHKEIVDQCRISFTAEIVKLGFAESSIDFFELPGAFEIP 60
           M H   +   A  R   + + W+  I D         +V  G ++ ++D   +PGA+EIP
Sbjct: 1   MTHYEGDLRPAGARFVIVCSRWNARITDALVAGACRTLVDNGVSDDAVDVVRVPGAWEIP 60

Query: 61  LHAKLLAKTGKYAGIVAAGLVVDGGIYRHDFVAQAVITSLMNVQLETEVPVFSAVL 116
           + A LLA+ G++A I+A G VV G    ++ VA      +M+VQ++T VPV + VL
Sbjct: 61  IVANLLAQVGQHAAIIALGCVVRGDTRHYEHVADLCAEGMMSVQMQTGVPVLNGVL 116


>CC0888 [H] COG0054 Riboflavin synthase beta-chain Ccr Caulobacter
           vibrioides
          Length = 153

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 8   TSSARNRIAFIQASWHKEIVDQCRISFTAEIVKLGFAESSIDFFELPGAFEIPLHAKLLA 67
           T     RIA + + ++ E+ D         +   G   ++ D    PGA+E+PL A+ LA
Sbjct: 2   TDPVPPRIAIVVSQFNPEVTDGLLKGALDHLAAQGAPVAAPDIIAAPGAYELPLIAQTLA 61

Query: 68  KTGKYAGIVAAGLVVDGGIYRHDFVAQAVITSLMNVQLETEVPVFSAVLTPHHFHSHGEH 127
           +TG+YAG+V  G V+ G     +F++      LM   L+TE PV   VLT +        
Sbjct: 62  RTGRYAGVVCLGCVIKGETAHFEFISLGASLGLMAAGLQTETPVSFGVLTTYTDEQAVAR 121

Query: 128 QQFFQEHFVVKGQEVARACADTVVKVARIE 157
            +   E+   KG+E A AC  TV  + RI 
Sbjct: 122 SRDDAEN---KGREAANACLSTVQTLRRIR 148