BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0185.p         (316 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2314_1 [NT] COG0835 Chemotaxis signal transduction protein St...   241   2e-63
RSp0598_1 [NT] COG0835 Chemotaxis signal transduction protein Rs...   204   2e-52
RSp0598_2 [T] COG0784 FOG Rso Ralstonia solanacearum                  178   1e-44
STM2314_2 [T] COG0784 FOG Sty Salmonella typhimurium LT2              168   1e-41
VC2202_2 [T] COG0784 FOG Vch Vibrio cholerae                          113   6e-25

>STM2314_1 [NT] COG0835 Chemotaxis signal transduction protein Sty Salmonella
           typhimurium LT2
          Length = 189

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 146/188 (77%), Gaps = 2/188 (1%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAG 60
           MD FQK+ID+R NLT SN+FELLLFRLGT  +  +SELFGINVFK+REIVPM   T+ AG
Sbjct: 1   MDNFQKDIDDRANLTLSNRFELLLFRLGTSLHEQKSELFGINVFKLREIVPMPAFTRPAG 60

Query: 61  TRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLE 120
            ++PLLGMVNIR Q+I VIDLPAV GC P +GLNILL+TEYARS QAFAVESV+ I+RL+
Sbjct: 61  MKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITEYARSVQAFAVESVENIMRLD 120

Query: 121 WSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMTGLE--H 178
           W QV +AE    G ++TSIA LDD+  ++ LA VLDVEQIL++I+P+  D+  T L+   
Sbjct: 121 WQQVHTAEKAVNGRYITSIACLDDNKETNNLALVLDVEQILYDIVPSSHDLRATNLKTNK 180

Query: 179 IQLKPGSI 186
             + PG++
Sbjct: 181 FYITPGAV 188


>RSp0598_1 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 166

 Score =  204 bits (520), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 126/165 (76%), Gaps = 2/165 (1%)

Query: 5   QKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAGTRSP 64
           Q+E+DERTNLT++N+FELLLFRLG      R ELFGINVFK+REI+ M  +T  A   + 
Sbjct: 3   QQEVDERTNLTNNNRFELLLFRLGESQRSQR-ELFGINVFKVREIMVMPPVTHVADAGAH 61

Query: 65  LLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLEWSQV 124
           +LG VN+RGQII VIDL +VIGC  N   NILL+TEYARSTQ FAVE VDEIVRLEWSQ+
Sbjct: 62  ILGAVNVRGQIIPVIDLASVIGC-KNGNANILLITEYARSTQGFAVEEVDEIVRLEWSQI 120

Query: 125 LSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTER 169
             AE+  G   +TS+ARLD +  +SRLAQV+DVEQIL ++ PT R
Sbjct: 121 FPAEASVGSANITSLARLDGNADNSRLAQVIDVEQILVDVFPTRR 165


>RSp0598_2 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 147

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 110/137 (80%)

Query: 179 IQLKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVPI 238
           I+L PG+ +L ADDS +ARSL+ +GL+A+G PFVM K+G+EAW+ LQ+I ++   +G  +
Sbjct: 11  IKLPPGAKLLVADDSGLARSLIANGLEAMGAPFVMTKSGQEAWDTLQNIARDAAREGKTV 70

Query: 239 TDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYV 298
            D++A+VLTDLEMPEMDGFTLTR IK +   ++IPVVIHSSLSGSANE+HV+ +GA+GYV
Sbjct: 71  RDKIALVLTDLEMPEMDGFTLTRKIKSEPAFQSIPVVIHSSLSGSANEDHVRRVGANGYV 130

Query: 299 AKFVIEDLTAALIKALG 315
           AKF   +L  A++ ALG
Sbjct: 131 AKFEANELAQAIVSALG 147


>STM2314_2 [T] COG0784 FOG Sty Salmonella typhimurium LT2
          Length = 144

 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 105/127 (82%)

Query: 188 LAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVPITDRVAMVLT 247
           + A+DSKVAR+++E GL A+G+P  M  TGK+AWE++Q + +E +++G PI++++A+VLT
Sbjct: 1   IVAEDSKVARAMLEKGLNAMGIPHQMHVTGKDAWERIQQLAQEAEAEGKPISEKIALVLT 60

Query: 248 DLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYVAKFVIEDLT 307
           DLEMPEMDGFTLTR IK D+ LK IPVVIHSSLSGSANE+H++ + ADGYVAKF I +L+
Sbjct: 61  DLEMPEMDGFTLTRKIKTDERLKKIPVVIHSSLSGSANEDHIRKVKADGYVAKFEINELS 120

Query: 308 AALIKAL 314
           + + + L
Sbjct: 121 SVIQEVL 127


>VC2202_2 [T] COG0784 FOG Vch Vibrio cholerae
          Length = 140

 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 90/130 (69%), Gaps = 5/130 (3%)

Query: 187 ILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVPITDRVAMVL 246
           IL ADDS VAR  V+  ++++G   V  K GK+A+EKL ++  E      PI++++++V+
Sbjct: 16  ILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSEG-----PISNQISLVI 70

Query: 247 TDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYVAKFVIEDL 306
           +D+EMPEMDG+TLT  I+R + LK + V++HSSLSG  N+  V+ +GA+ ++AKF  ++L
Sbjct: 71  SDIEMPEMDGYTLTAEIRRHNELKDLYVILHSSLSGVFNQAMVERVGANAFIAKFNPDEL 130

Query: 307 TAALIKALGK 316
             A+  AL K
Sbjct: 131 GNAVKAALVK 140