BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0172.p (321 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1064 [R] COG1159 GTPase Rso Ralstonia solanacearum 319 7e-87 NMA0889 [R] COG1159 GTPase NmA Neisseria meningitidis Z2491 253 6e-67 NMB0687 [R] COG1159 GTPase Nme Neisseria meningitidis MC58 253 6e-67 era [R] COG1159 GTPase Eco Escherichia coli K12 241 1e-63 XF2247 [R] COG1159 GTPase Xfa Xylella fastidiosa 9a5c 240 3e-63 >RSc1064 [R] COG1159 GTPase Rso Ralstonia solanacearum Length = 298 Score = 319 bits (817), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 152/248 (61%), Positives = 192/248 (77%), Gaps = 3/248 (1%) Query: 18 YRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQFVYVDTPG 77 +RCG +AIVGRPNVGKSTLMNAL+G KVSITSRKAQTTRHRITGIQT ++ QFV+VDTPG Sbjct: 5 FRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPG 64 Query: 78 FQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALLPANVPCILVMNKS 137 FQTRH+ ALN++LNR VTSTLT+ D +L+V+EAG +GP D +V++LLP P IL++NK Sbjct: 65 FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRETPVILIVNKV 124 Query: 138 DR---SKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVNPPMFDED 194 DR ++ F QE+A F +VP+SAK R + L +R LP PM+D + Sbjct: 125 DRLDAYTRAEMVAVFLQEMAQVFPFKEIVPMSAKNRDDILRLLGIVRPYLPEGEPMYDPE 184 Query: 195 DITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILVERDGHKS 254 +TDRSE+FLA+EIVREKVFR+ G+ELPY+STV+++KFE EG LRRVF ILV+RD HK+ Sbjct: 185 ALTDRSERFLAAEIVREKVFRWTGDELPYSSTVVVDKFETEGRLRRVFVTILVDRDAHKA 244 Query: 255 MVIGNKGG 262 M+IG KG Sbjct: 245 MIIGAKGA 252 >NMA0889 [R] COG1159 GTPase NmA Neisseria meningitidis Z2491 Length = 307 Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 135/255 (52%), Positives = 183/255 (71%), Gaps = 3/255 (1%) Query: 10 ASTDALSDYRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQ 69 A A YRCG++AIVGRPNVGKSTLMN LIG K+SITS+KAQTTR+R+TGI T + Q Sbjct: 8 AGERAADGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQ 67 Query: 70 FVYVDTPGFQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALLPANVP 129 FV+VDTPGFQT H NALN LN+ VT L DV+++V+EA F AD+ V+ LP + P Sbjct: 68 FVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP 127 Query: 130 CILVMNK--SDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVN 187 ILV+NK D++KD+ L F +V ++ FA+ VSAK ++ +L E I+ LP + Sbjct: 128 VILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPES 187 Query: 188 PPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILV 247 PM+ ED +TD+S +FLA EIVREK+FR++GEELPY V +E+FE+E L R++ A+LV Sbjct: 188 VPMYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLV 247 Query: 248 ERDGHKSMVIGNKGG 262 +++ K+++IG KGG Sbjct: 248 DKESQKAILIG-KGG 261 >NMB0687 [R] COG1159 GTPase Nme Neisseria meningitidis MC58 Length = 324 Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 135/255 (52%), Positives = 183/255 (71%), Gaps = 3/255 (1%) Query: 10 ASTDALSDYRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQ 69 A A YRCG++AIVGRPNVGKSTLMN LIG K+SITS+KAQTTR+R+TGI T + Q Sbjct: 25 AGERAAGGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQ 84 Query: 70 FVYVDTPGFQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALLPANVP 129 FV+VDTPGFQT H NALN LN+ VT L DV+++V+EA F AD+ V+ LP + P Sbjct: 85 FVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP 144 Query: 130 CILVMNK--SDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVN 187 ILV+NK D++KD+ L F +V ++ FA+ VSAK ++ +L E I+ LP + Sbjct: 145 VILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPES 204 Query: 188 PPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILV 247 PM+ ED +TD+S +FLA EIVREK+FR++GEELPY V +E+FE+E L R++ A+LV Sbjct: 205 VPMYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLV 264 Query: 248 ERDGHKSMVIGNKGG 262 +++ K+++IG KGG Sbjct: 265 DKESQKAILIG-KGG 278 >era [R] COG1159 GTPase Eco Escherichia coli K12 Length = 301 Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/245 (49%), Positives = 165/245 (67%), Gaps = 2/245 (0%) Query: 20 CGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQFVYVDTPGFQ 79 CG+IAIVGRPNVGKSTL+N L+G K+SITSRKAQTTRHRI GI T Q +YVDTPG Sbjct: 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 Query: 80 TRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVM-ALLPANVPCILVMNKSD 138 A+N+ +N+ +S++ +++++V+E + P D+ V+ L P IL +NK D Sbjct: 68 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVD 127 Query: 139 RSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVNPPMFDEDDITD 198 ++K+ L+P Q +ASQ NF +VP+SA+ +D++ +RK LP F ED ITD Sbjct: 128 NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Query: 199 RSEKFLASEIVREKVFRFVGEELPYTSTVLIEKF-EQEGDLRRVFAAILVERDGHKSMVI 257 RS++F+ASEI+REK+ RF+G ELPY+ TV IE+F E + ILVER+G K MVI Sbjct: 188 RSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVI 247 Query: 258 GNKGG 262 GNKG Sbjct: 248 GNKGA 252 >XF2247 [R] COG1159 GTPase Xfa Xylella fastidiosa 9a5c Length = 298 Score = 240 bits (613), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/247 (49%), Positives = 160/247 (64%), Gaps = 2/247 (0%) Query: 18 YRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQFVYVDTPG 77 YRCG IA++GRPNVGKSTL NAL+G K+SI S + QTTRHR+ GI T Q V VDTPG Sbjct: 7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPG 66 Query: 78 FQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALL-PANVPCILVMNK 136 + +N+ +NRT +L D L V E+ + D LL +P +LV+NK Sbjct: 67 LHREQKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTGIPVVLVINK 126 Query: 137 SDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVNPPMFDEDDI 196 DR KDKS L+PF + H F ++ PVSA +R L++L ++ LLP PMF ED+I Sbjct: 127 IDRFKDKSALLPFLTHINENHTFTTIHPVSALKRKGLETLVSDLLALLPEGDPMFSEDEI 186 Query: 197 TDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILVERDGHKSMV 256 TDRS++FLASE+VRE+V R +GEELPY +TV IE F + L R+ A I VER+ K++V Sbjct: 187 TDRSQRFLASELVREQVMRQLGEELPYATTVEIEYFTENTGLFRIGALIWVERESQKAIV 246 Query: 257 IGNKGGG 263 IG KGG Sbjct: 247 IG-KGGA 252