BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0152.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA0545 [R] COG1399 Predicted metal-binding, possibly nucleic ac...    91   6e-19
NMB1910 [R] COG1399 Predicted metal-binding, possibly nucleic ac...    88   5e-18
RSc1047 Non COG                                                        84   8e-17
PA2971 [R] COG1399 Predicted metal-binding, possibly nucleic aci...    64   8e-11

>NMA0545 [R] COG1399 Predicted metal-binding, possibly nucleic acid-binding
           protein NmA Neisseria meningitidis Z2491
          Length = 167

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 31  ADRAGVLKWSLSGGADKVGHPQLKLSVSGQVNLVCQRCLTAMPFTVSSESVLVLAKDEES 90
           ADR   + ++L+GG D++ H  L L+V   + L+CQRC+  MPF +   S +VL  +EES
Sbjct: 39  ADRQTKISFTLTGGRDRLQHLFLDLNVKADMPLICQRCIKPMPFMLDESSRIVLFSNEES 98

Query: 91  ADAIEELLNDESIDVIVGEAEFNVGYLVEDEALLALPVAPKHDXC 135
            D  E +L DE ++ I+ E E +V  LVED+ L++LP +P+H+ C
Sbjct: 99  LD--ESMLADEELEGILIEKELDVRTLVEDQILMSLPFSPRHEDC 141


>NMB1910 [R] COG1399 Predicted metal-binding, possibly nucleic acid-binding
           protein Nme Neisseria meningitidis MC58
          Length = 167

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 31  ADRAGVLKWSLSGGADKVGHPQLKLSVSGQVNLVCQRCLTAMPFTVSSESVLVLAKDEES 90
           ADR   + ++L+GG D++    L L+V   + L+CQRC+  MPF +   S +VL  +EES
Sbjct: 39  ADRQTKISFTLTGGRDRLQRLFLDLNVKADMPLICQRCIKPMPFMLDESSRIVLFSNEES 98

Query: 91  ADAIEELLNDESIDVIVGEAEFNVGYLVEDEALLALPVAPKHDXC 135
            D  E +L DE ++ I+ E E +V  LVED+ L++LP +P+H+ C
Sbjct: 99  LD--ESMLADEELEGILIEKELDVRTLVEDQILMSLPFSPRHEDC 141


>RSc1047 Non COG
          Length = 179

 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 16/148 (10%)

Query: 2   IDAFEFSRLKEQAEGELAVADMARLAGETA-----DRAGVLKWSLSG---------GADK 47
            D F F R  EQ  G L +A+M RL  E A     D   + +W + G         G   
Sbjct: 6   FDLFAFIRGGEQVSGSLGLAEMPRLLAEQAADVSTDAGNLFRWRMQGVMRDEAVAAGQSP 65

Query: 48  VGHPQLKLSVSGQVNLVCQRCLTAMPFTVSSESVLVLAKDEESADAIEELLNDESIDVIV 107
                + L V G V L CQRCL A    +S  + L + + E  ADA    L+D+  DVIV
Sbjct: 66  RQRLFVDLEVGGAVWLQCQRCLHAYEQPLSVRTRLEVVRSESEADAAP--LDDDEADVIV 123

Query: 108 GEAEFNVGYLVEDEALLALPVAPKHDXC 135
           G  +F++   +EDE LLALPV+P+H+ C
Sbjct: 124 GSRDFDLISQIEDELLLALPVSPRHETC 151


>PA2971 [R] COG1399 Predicted metal-binding, possibly nucleic acid-binding
           protein Pae Pseudomonas aeruginosa
          Length = 178

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 15  EGELAVADMARLAGETADRAGVLKWSLSGGADKVGHPQLKLSVSGQVNLVCQRCLTAMPF 74
           EG  A+ADM R+  +    AG ++  +S   D      + + +  +V++VCQRCL A   
Sbjct: 23  EGVYALADMPRVCEQLTSDAGEVRVKVSFERDHQKLAVMHMQLDTEVSMVCQRCLDAAAI 82

Query: 75  TVSSESVLVLAKDEESADAIEELLNDESIDVI-VGEAEFNVGYLVEDEALLALPVAPKHD 133
            V  E    + ++ +SAD +      +  D + VGE   ++  LVEDE LLALP+ P HD
Sbjct: 83  PVHGEYTYAILREGQSADGLP-----KGYDALEVGEEPLDLLALVEDELLLALPIVPAHD 137