BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0144.p (575 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3648 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58... 178 4e-44 aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus 155 3e-37 PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa 139 1e-32 PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa 135 2e-31 AGc2387 [T] COG3706 Response regulator containing a CheY-like re... 132 3e-30 >AGc3648 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 579 Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 150/519 (28%), Positives = 238/519 (45%), Gaps = 11/519 (2%) Query: 56 VSIERGPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRK-I 114 VS ERGP+N LM A +L +RL AR+ +D+ L +V S E ++ P + K + Sbjct: 58 VSAERGPANNLMAATS-ADASLVERLAVARKATDDKLSQVETSFAEE--IKAQPRLAKSL 114 Query: 115 EAVRQALGPARDRVDQQVGLVKWQRSSREITEAVDGMVALIPMLVSSVADLSSIAIQADP 174 RQ L +R+ VD L RS + A+ M + + I P Sbjct: 115 AETRQKLAQSREAVDAVAALPAEARSYSAMANAIQSMFTAADSVNLLRGKAARAIITKTP 174 Query: 175 EVLDGLTGMRVAASLREYAGQVGSKFTAPVIMRRPLTKNEVIEIGKLYGRIEQLRTLLDI 234 +V + A +R+ G++GS + R + + + +++ L Sbjct: 175 DVAIDIAMTGTAGVMRDRIGRLGSYVVMSLQANRQDRLSYRAKFDTEMQSVMLVKSSLWN 234 Query: 235 QMRAYKDNPAFRTALSDLDTQYFGQGFPFLDGLLQTGLLSGSYEVNTAELAARYVPPMGS 294 AY P A D DT YFGQ + + ++ S + + + Y+ M S Sbjct: 235 YTAAYLSTPRLDAAFRDFDTYYFGQSLRYAQNTI--AIVVPSALPSIRDFSENYIQGMRS 292 Query: 295 ILRLRDAILVDLIREAEIRHRQAFNLLIGAITMTLFAFIFFFLLLYLVRQRVLRPVLKAT 354 +LRD IL + E +QA + ++ + L A + L + + + +P+ Sbjct: 293 SDQLRDLILAETRARIEKNKQQALIYGLASLFLALIAVMVLLRLTSVYKTALFQPMQSVL 352 Query: 355 QLVVGLAEGNHDAPIPQARHKDEIGDMLRALHVLKARSLERISLAGERETLIEQLQLSSN 414 + +A G+ Q E+ M + L L+ + ++ + ++ L EQL+ S Sbjct: 353 AQISAIAAGDLSEAQRQTGVAPEVTKMFQELDFLREQLRQKGEMEEQQRALSEQLRTLSE 412 Query: 415 TDFLTGVLNRRAFFAHSEQQLAIAQRYGRNLTLVLLDIDHFKRFNDNYGHLVGDDILRNA 474 TD LTGV NRRA L+ + Y ++L ++++DIDHFK ND YGH +GD L+ Sbjct: 413 TDALTGVFNRRALEKSVRAILSGDEDY-QSLGVMIIDIDHFKSINDRYGHAMGDLALQKT 471 Query: 475 VQKIAQLLRKMDVFARYGGEEFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIGI 534 + LRK D+ ARYGGEEF+++L + A A++LR ++ Q F D+ + + Sbjct: 472 ASLLKGALRKTDILARYGGEEFVVVLQDVSHATATATADRLRRLIEVQTF--DEQTGLSL 529 Query: 535 TASFGVTALGTG--ESLDQLIRQADVALYAAKHKGRNRV 571 TASFGV S D+LI AD LY AK GRNRV Sbjct: 530 TASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568 >aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 251 Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 144/243 (59%), Gaps = 14/243 (5%) Query: 341 LVRQRVLRPVLKATQLVVGLAEGNHDAPIPQA--------RHKDEIGDM--LRALHVLKA 390 LV R L + K + + G+ +G + R KD+ ++ L+ + Sbjct: 4 LVISRYLSSISKDLKFLSGIIKGVAKKEFSKTDLLRENAMRSKDKDSEIYELKVAVIKMI 63 Query: 391 RSLERISLAGERE-TLIEQLQLSSNTDFLTGVLNRRAFFAHSEQQLAIAQRYGRNLTLVL 449 +L++I + +E TL E++ L TD LTG+ NRR F +E++LA A+RYG N ++++ Sbjct: 64 ETLKKILIETSKEKTLYERMAL---TDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILM 120 Query: 450 LDIDHFKRFNDNYGHLVGDDILRNAVQKIAQLLRKMDVFARYGGEEFIILLPEADLEQGI 509 +DID+FK+ ND YGH VGD +L+ + + + +R D+ AR+GGEEFI++L +L + Sbjct: 121 IDIDNFKKINDTYGHDVGDLVLKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAV 180 Query: 510 AVAEKLRVMLATQAFALDDGREIGITASFGVTALGTGESLDQLIRQADVALYAAKHKGRN 569 AE+LR M+ L +G ++ +T S GV+ ESL++LI++AD ALY AK KG+N Sbjct: 181 KKAEQLRRMIEQTPIELPNGEKLRVTVSIGVSTYRGHESLEELIKEADQALYEAKRKGKN 240 Query: 570 RVE 572 RVE Sbjct: 241 RVE 243 >PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 671 Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 4/202 (1%) Query: 371 QARHKDEIGDMLRALHVLKARSLERISLAGERETLIEQLQLSSNTDFLTGVLNRRAFFAH 430 QA H+ E+ L+AL + + S+E+ + A + +E + + TD LTG+ NR A Sbjct: 472 QAEHEQEVSGRLQAL-MERVNSMEQDAKAFH--SHLEDQRQKALTDPLTGLPNRAALSER 528 Query: 431 SEQQLAIAQRYGRNLTLVLLDIDHFKRFNDNYGHLVGDDILRNAVQKIAQLLRKMDVFAR 490 EQ++A R G +L L +LDIDHFKR ND++GHL GD +L+ ++ + LR+ D AR Sbjct: 529 LEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIAR 588 Query: 491 YGGEEFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIGITASFGVTALGTGESLD 550 +GGEEF++LLP LE G + E+LR +A F G + IT S G+TA E+ + Sbjct: 589 FGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHF-KGEPLSITCSAGITAFEGNEAGE 647 Query: 551 QLIRQADVALYAAKHKGRNRVE 572 + +AD ALY AK GR+R+E Sbjct: 648 AVFERADQALYRAKRAGRDRLE 669 >PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 525 Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 115/201 (57%), Gaps = 16/201 (7%) Query: 387 VLKARSLERISLAGERETLI------------EQLQLSSNTDFLTGVLNRRAFFAHSEQQ 434 V+ AR LE + GE TLI ++L+L ++TD LTG+ NR +F +E Sbjct: 326 VICARHLE---IDGEPATLIWCYDISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELM 382 Query: 435 LAIAQRYGRNLTLVLLDIDHFKRFNDNYGHLVGDDILRNAVQKIAQLLRKMDVFARYGGE 494 L A+R+ ++LDIDHFK ND++GHL GD L+ + + Q LR++D+ R GGE Sbjct: 383 LKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGE 442 Query: 495 EFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIGITASFGVT-ALGTGESLDQLI 553 EF LLPE L+Q + VAE+LR + + DG + +T S GV G+ L+ L+ Sbjct: 443 EFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLL 502 Query: 554 RQADVALYAAKHKGRNRVERA 574 +AD ALY AK GRNR E A Sbjct: 503 VRADSALYQAKSGGRNRTEYA 523 >AGc2387 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 456 Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 5/189 (2%) Query: 388 LKARSLERISLAGERETLIEQLQLSSN---TDFLTGVLNRRAFFAHSEQQLAIAQRYGRN 444 L ARSL +I E L LQ + D LTG+ NRR +H + A GR Sbjct: 263 LVARSLTQIRRKRYNEHLRLNLQHTMELAIVDGLTGLNNRRYLDSHLKILFDRAAVRGRP 322 Query: 445 LTLVLLDIDHFKRFNDNYGHLVGDDILRNAVQKIAQLLRKMDVFARYGGEEFIILLPEAD 504 +++ + DID FK ND YGH VGD++LR +I +R D+ RYGGEEF++++P+ Sbjct: 323 ISICMTDIDRFKLVNDTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTP 382 Query: 505 LEQGIAVAEKLRVMLATQAFALDD-GREIGITASFGV-TALGTGESLDQLIRQADVALYA 562 +E +VAE+LR ++ + F + RE+ ITAS G+ T+ G + D++++QAD ALY Sbjct: 383 IELAASVAERLRAIVEDKPFYVRSIDRELSITASLGIATSSGAFGAPDEILKQADKALYE 442 Query: 563 AKHKGRNRV 571 AKH GRNRV Sbjct: 443 AKHAGRNRV 451