BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0137.p (431 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2338 [L] COG2256 ATPase related to the helicase subunit of th... 647 0.0 NMA1433 [L] COG2256 ATPase related to the helicase subunit of th... 594 e-169 NMB1258 [L] COG2256 ATPase related to the helicase subunit of th... 591 e-169 PA2613 [L] COG2256 ATPase related to the helicase subunit of the... 522 e-148 PM0257 [L] COG2256 ATPase related to the helicase subunit of the... 466 e-131 >RSc2338 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Rso Ralstonia solanacearum Length = 449 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/431 (77%), Positives = 365/431 (84%), Gaps = 6/431 (1%) Query: 5 PLAERLRPHSFDDVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARIMADSF 64 PLAERLRPHS D+VIGQQHLLG KPLRVAF SGEPHSMILWGPPGVGKTTLAR+MAD+F Sbjct: 15 PLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPGVGKTTLARLMADAF 74 Query: 65 NAEFIALSAVLSGVKDIREAVERAEVIRANSGRRTILFVDEVHRFNKSQQDAFLPHVESG 124 +AEFIALSAVLSGVKDIR+AVERAE RA+ GRRT++FVDEVHRFNKSQQDAFLPHVESG Sbjct: 75 DAEFIALSAVLSGVKDIRDAVERAEQFRAH-GRRTLVFVDEVHRFNKSQQDAFLPHVESG 133 Query: 125 LFTFIGATTENPSFEVNGALLSRAAVYVLKSLTEEDLGALIDRACRDELDGLQFVPEARE 184 LFTFIGATTENPSFEVNGALLSRAAVYVLKSL++++L L +RA R EL GL++ P A + Sbjct: 134 LFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERA-RQELGGLEWAPAAVD 192 Query: 185 MLIASADGDGRKLLNNLEIVARAAQAK----SVAIVGTELLAECLGDALRRFDKGGDAFY 240 ++ASADGDGRKLLNN+EIV RAA+A+ +V + LLA L + LRRFDKGGDAFY Sbjct: 193 AVVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSENLRRFDKGGDAFY 252 Query: 241 DQISALHKSVRGSSPDGALYWLTRMLDGGTDPRYLARRIVRMAWEDIGLADPRAMTIAND 300 DQISALHKSVRGS PD ALYW RMLDGG DPRYLARRIVRMAWEDIGLADPRA I D Sbjct: 253 DQISALHKSVRGSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLD 312 Query: 301 AAATYERLGSPEGELALAQAVIYLAIAAKSNAGYMAYNQARAFVAKDKSRGVPEHLRNAP 360 AA TYERLGSPEGELALAQA+IYLAIA KSNAGY AYN ARAFV DKSR VP HLRNAP Sbjct: 313 AAETYERLGSPEGELALAQALIYLAIAPKSNAGYNAYNAARAFVGHDKSRAVPVHLRNAP 372 Query: 361 TKLMKQLGYGKLYRYAHDEPEGYAAGETYLPDGIPDPHWYQPVPRGLEAKIGDKMAHLRE 420 T+LMK+LGYG YRYAHDEPE YAAGETY PD + WY P PRGLE KIGDK+ HLRE Sbjct: 373 TRLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLSPQGWYVPTPRGLEGKIGDKLRHLRE 432 Query: 421 LDREYKKNNKD 431 LD ++ K+ Sbjct: 433 LDAQWLAQQKN 443 >NMA1433 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase NmA Neisseria meningitidis Z2491 Length = 436 Score = 594 bits (1531), Expect = e-169, Method: Compositional matrix adjust. Identities = 298/425 (70%), Positives = 349/425 (82%), Gaps = 2/425 (0%) Query: 4 APLAERLRPHSFDDVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARIMADS 63 APLAERLRPH+ DDV+GQ+HL+G GKPLRVA E G+PHSM+LWGPPGVGKTTLARI+A S Sbjct: 11 APLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGKTTLARILAQS 70 Query: 64 FNAEFIALSAVLSGVKDIREAVERAEVIRANSGRRTILFVDEVHRFNKSQQDAFLPHVES 123 FNA+F+ +SAV SGVKDIREA+++AE I GR TILFVDEVHRFNK+QQDAFLPHVES Sbjct: 71 FNAQFLPVSAVFSGVKDIREAIDKAE-IALQQGRATILFVDEVHRFNKAQQDAFLPHVES 129 Query: 124 GLFTFIGATTENPSFEVNGALLSRAAVYVLKSLTEEDLGALIDRA-CRDELDGLQFVPEA 182 GL TFIGATTENPSFEVN ALLSRA VYVL+ L+ +DL LI + E +A Sbjct: 130 GLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQEFTIETDA 189 Query: 183 REMLIASADGDGRKLLNNLEIVARAAQAKSVAIVGTELLAECLGDALRRFDKGGDAFYDQ 242 +++L+ + DGD R+LLN LE + RAA + + + E LA+ LG +RRFDKGG++FY+Q Sbjct: 190 QKLLVNTVDGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFDKGGESFYNQ 249 Query: 243 ISALHKSVRGSSPDGALYWLTRMLDGGTDPRYLARRIVRMAWEDIGLADPRAMTIANDAA 302 ISALHKSVRGS P+ ALYW RMLDGGTDPRYLARRIVR+AWEDIGLADPRA+ IANDAA Sbjct: 250 ISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPRALQIANDAA 309 Query: 303 ATYERLGSPEGELALAQAVIYLAIAAKSNAGYMAYNQARAFVAKDKSRGVPEHLRNAPTK 362 AT+ERLGSPEGELALAQAV+YLA AAKSNAGY AYNQ R FV ++ S VP HLRNAPTK Sbjct: 310 ATFERLGSPEGELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTK 369 Query: 363 LMKQLGYGKLYRYAHDEPEGYAAGETYLPDGIPDPHWYQPVPRGLEAKIGDKMAHLRELD 422 LMK+LGYG+ YRYAHDEP YAAGE+Y+PDG+ +P +YQPVPRGLE KIG+K+A L+ LD Sbjct: 370 LMKELGYGREYRYAHDEPNAYAAGESYMPDGLDEPDFYQPVPRGLEIKIGEKLAWLKSLD 429 Query: 423 REYKK 427 E K Sbjct: 430 EEVLK 434 >NMB1258 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Nme Neisseria meningitidis MC58 Length = 436 Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust. Identities = 297/425 (69%), Positives = 348/425 (81%), Gaps = 2/425 (0%) Query: 4 APLAERLRPHSFDDVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARIMADS 63 APLAERLRPH+ DDV+GQ+HL+G GKPLRVA E G+PHSM+LWGPPGVGKTTLARI+A S Sbjct: 11 APLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGKTTLARILAQS 70 Query: 64 FNAEFIALSAVLSGVKDIREAVERAEVIRANSGRRTILFVDEVHRFNKSQQDAFLPHVES 123 FNA+F+ +SAV SGVKDIREA+++AE I GR TILFVDEVHRFNK+QQDAFLPHVES Sbjct: 71 FNAQFLPVSAVFSGVKDIREAIDKAE-IALQQGRATILFVDEVHRFNKAQQDAFLPHVES 129 Query: 124 GLFTFIGATTENPSFEVNGALLSRAAVYVLKSLTEEDLGALIDRA-CRDELDGLQFVPEA 182 GL TFIGATTENPSFEVN ALLSRA VYVL+ L+ +DL LI + E +A Sbjct: 130 GLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQEFTIETDA 189 Query: 183 REMLIASADGDGRKLLNNLEIVARAAQAKSVAIVGTELLAECLGDALRRFDKGGDAFYDQ 242 +++L+ +ADGD R+LLN LE + RAA + + + E LA+ LG +RRFDKGG++FY+Q Sbjct: 190 QKLLVNTADGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFDKGGESFYNQ 249 Query: 243 ISALHKSVRGSSPDGALYWLTRMLDGGTDPRYLARRIVRMAWEDIGLADPRAMTIANDAA 302 ISALHKSVRGS P+ ALYW RMLDGGTDPRYLARRIVR+AWEDIGLADPRA IANDAA Sbjct: 250 ISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPRAFQIANDAA 309 Query: 303 ATYERLGSPEGELALAQAVIYLAIAAKSNAGYMAYNQARAFVAKDKSRGVPEHLRNAPTK 362 AT+ERLGSPEGELALAQAV+YLA AAKSNAGY AYNQ R FV ++ S VP HLRNAPTK Sbjct: 310 ATFERLGSPEGELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTK 369 Query: 363 LMKQLGYGKLYRYAHDEPEGYAAGETYLPDGIPDPHWYQPVPRGLEAKIGDKMAHLRELD 422 LMK+LGYG+ YRYAHDEP Y+AGE+Y+PDG+ +P +YQPVPRGLE KIG+K+ L+ LD Sbjct: 370 LMKELGYGREYRYAHDEPNAYSAGESYMPDGLDEPDFYQPVPRGLEIKIGEKLEWLKSLD 429 Query: 423 REYKK 427 E K Sbjct: 430 EEVLK 434 >PA2613 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Pae Pseudomonas aeruginosa Length = 441 Score = 522 bits (1345), Expect = e-148, Method: Compositional matrix adjust. Identities = 272/430 (63%), Positives = 318/430 (73%), Gaps = 6/430 (1%) Query: 5 PLAERLRPHSFDDVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARIMADSF 64 PLA RLRP + D+ +GQ+HLL GKPLR A E G HSMI WGPPGVGKTTLAR++A Sbjct: 12 PLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQVS 71 Query: 65 NAEFIALSAVLSGVKDIREAVERAEVIRANSGRRTILFVDEVHRFNKSQQDAFLPHVESG 124 +A F +SAVLSGVK+IR+AVE A+ A GRRTILFVDEVHRFNKSQQDAFLP+VE G Sbjct: 72 DAHFETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDG 131 Query: 125 LFTFIGATTENPSFEVNGALLSRAAVYVLKSLTEEDLGALIDRACRDELD----GLQFVP 180 FIGATTENPSFE+N ALLSRA VYVLKSL E L L+ RA ++ L+ Sbjct: 132 TLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLRLPE 191 Query: 181 EAREMLIASADGDGRKLLNNLEIVARAAQAKSVAIVGTELLAECLGDALRRFDKGGDAFY 240 E+ ++L+A+ADGDGR+LLN LE A A+ S + ELL LGD RRFDKGG+AFY Sbjct: 192 ESFQVLLAAADGDGRRLLNLLENAADLAEDGSE--ISPELLQNLLGDTRRRFDKGGEAFY 249 Query: 241 DQISALHKSVRGSSPDGALYWLTRMLDGGTDPRYLARRIVRMAWEDIGLADPRAMTIAND 300 DQISALHKSVRGS+PD ALYW RMLDGG DP Y+ARR+VRMA E++G ADPRA+ + Sbjct: 250 DQISALHKSVRGSNPDAALYWFARMLDGGCDPLYIARRVVRMASEEVGNADPRALGLCLS 309 Query: 301 AAATYERLGSPEGELALAQAVIYLAIAAKSNAGYMAYNQARAFVAKDKSRGVPEHLRNAP 360 A ERLGSPEGELA+AQA++YLA A KSNA Y A+N A VA+ SR VP HLRNAP Sbjct: 310 AWDVQERLGSPEGELAVAQAIVYLACAPKSNAVYSAFNAAMRDVAESGSREVPLHLRNAP 369 Query: 361 TKLMKQLGYGKLYRYAHDEPEGYAAGETYLPDGIPDPHWYQPVPRGLEAKIGDKMAHLRE 420 TKLMK LGYG+ YRYAHDEP+ YAAGE Y P+ + +YQPVPRGLE KI DK+ HL E Sbjct: 370 TKLMKSLGYGEEYRYAHDEPDAYAAGEDYFPEDLEPRRYYQPVPRGLELKIRDKLEHLAE 429 Query: 421 LDREYKKNNK 430 LDR + + Sbjct: 430 LDRTSPRQRR 439 >PM0257 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Pmu Pasteurella multocida Length = 445 Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust. Identities = 241/430 (56%), Positives = 300/430 (69%), Gaps = 7/430 (1%) Query: 5 PLAERLRPHSFDDVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARIMADSF 64 PLA R+RP +F GQ HL+G GKPLR A ++G HSMILWGPPG GKTTLA I+A Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAHQI 74 Query: 65 NAEFIALSAVLSGVKDIREAVERAEVIRANSGRRTILFVDEVHRFNKSQQDAFLPHVESG 124 +A+ +SAV SG+K+IREA+ERA+ R + RRTILFVDEVHRFNKSQQDAFLPH+E G Sbjct: 75 HADVERISAVTSGIKEIREAIERAKENRL-AERRTILFVDEVHRFNKSQQDAFLPHIEDG 133 Query: 125 LFTFIGATTENPSFEVNGALLSRAAVYVLKSLTEEDLGALIDRACRDELDGL---QFVPE 181 FIGATTENPSFE+N ALLSRA VY+LKSL+ +++ ++ +A DE GL +FV E Sbjct: 134 TIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGLGKVRFVLE 193 Query: 182 AR--EMLIASADGDGRKLLNNLEIVARAAQAKSVAIVGT-ELLAECLGDALRRFDKGGDA 238 E L +GD R LN+LE++A A+ T LL LG+ RFDK GD Sbjct: 194 ENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVLGERQARFDKQGDR 253 Query: 239 FYDQISALHKSVRGSSPDGALYWLTRMLDGGTDPRYLARRIVRMAWEDIGLADPRAMTIA 298 FYD ISALHKSVRGS+PD ALYW R+L G DP Y+ARR++ +A ED+G ADPRAM +A Sbjct: 254 FYDAISALHKSVRGSAPDAALYWYARILAAGGDPLYVARRLLAIASEDVGNADPRAMQVA 313 Query: 299 NDAAATYERLGSPEGELALAQAVIYLAIAAKSNAGYMAYNQARAFVAKDKSRGVPEHLRN 358 A + R+G+ EGE A+AQA++YLA+A KSNA Y A+NQA+ V + VP HLRN Sbjct: 314 LAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAVYRAFNQAKQHVKETPDYEVPAHLRN 373 Query: 359 APTKLMKQLGYGKLYRYAHDEPEGYAAGETYLPDGIPDPHWYQPVPRGLEAKIGDKMAHL 418 APT LMK LGYG+ YRYAHDE YAAGE Y P+ + D +Y P RG+E KI +K+ L Sbjct: 374 APTHLMKTLGYGEAYRYAHDEEHAYAAGENYFPEALKDTQYYFPTHRGMEIKIKEKLDWL 433 Query: 419 RELDREYKKN 428 R+ D++ KK Sbjct: 434 RQQDQQSKKK 443