BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0108.p (187 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport... 178 5e-45 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 129 3e-30 BMEI0261 [E] COG0410 ABC-type branched-chain amino acid transpor... 128 9e-30 AF0822 [E] COG0410 ABC-type branched-chain amino acid transport ... 124 1e-28 DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport... 122 3e-28 >RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 241 Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 140/239 (58%), Gaps = 65/239 (27%) Query: 14 VILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAA----R 69 V+L+V+ L VSYGHI AVKGI LN GEIT+LVGANGAGKST+LLA+SGL+ + R Sbjct: 3 VLLEVKGLEVSYGHIAAVKGIDFALNAGEITSLVGANGAGKSTTLLALSGLIPKSQGEVR 62 Query: 70 GKVIFNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAVX---- 125 G+++F G D+TQ S H+ V G+VQVAEGRATLTT+T+ ENL LGAYTRKD++ + Sbjct: 63 GQILFEGADVTQWSAHKRVERGIVQVAEGRATLTTMTVRENLELGAYTRKDRSQIASDLE 122 Query: 126 -IFRIVKEINK--TGMT----------------------VLLVE-----------QNVRQ 149 +F + + + GM VLL++ Q + + Sbjct: 123 RVFHLFPRLKERIDGMAGNLSGGEQQMLAIGRALMARPRVLLLDEPSMGLAPIIVQEIFR 182 Query: 150 ALR---------------------IAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLGG 187 LR IAQRGYVLETG+IVL D+G LL NP+V+EAYLGG Sbjct: 183 ILRTINAEGLTIFLVEQNVRQALKIAQRGYVLETGQIVLADSGQRLLGNPRVLEAYLGG 241 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 115/235 (48%), Gaps = 61/235 (25%) Query: 13 NVILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAARGKV 72 +++L+VQ L V YG I A+KGI L + G+I L+GANGAGK+T+L AI+GLV+A +GK+ Sbjct: 3 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 62 Query: 73 IFNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAV-----XIF 127 IFNG+DIT + H I G+ V EGR LT+ ENL +GAY RKDK + IF Sbjct: 63 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 122 Query: 128 RIVKEINKT------------------------------------GMTVLLVEQNVRQAL 151 + + + G+ +LV + Sbjct: 123 SLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 182 Query: 152 RIAQRG--------------------YVLETGKIVLEDTGANLLHNPKVVEAYLG 186 +I Q G YVLETG+IVLE + LL N V +AYLG Sbjct: 183 KINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLG 237 >BMEI0261 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 249 Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 115/234 (49%), Gaps = 61/234 (26%) Query: 15 ILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAARGKVIF 74 +L V+ + YG+I A+KGI +T++EGEI AL+GANGAGKST ++ I G +A G+++F Sbjct: 13 LLSVEKVETYYGNICALKGIDMTVDEGEIVALIGANGAGKSTLMMTIFGSPRARTGRILF 72 Query: 75 NGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGA------YTRKD-KAAVXIF 127 NG+DIT PH I + Q EGR +T+ ENL +GA Y +D K +F Sbjct: 73 NGKDITSMPPHEIAKLRIAQSPEGRRIFPRMTVLENLQMGASLDNQQYFDEDVKLMFDLF 132 Query: 128 RIVKE-----------------------------------------------------IN 134 +KE +N Sbjct: 133 PRLKERINQRGGTLSGGEQQMLAIARALMVRPKLLLLDEPSLGLAPLIVKQIFEAIKELN 192 Query: 135 KT-GMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLGG 187 +T G+TV LVEQN AL++A RGYV+ G I + +G LL +P+V AYL G Sbjct: 193 RTQGLTVFLVEQNAFGALKLADRGYVMVNGSITMSGSGRELLSDPEVRAAYLEG 246 >AF0822 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Afu Archaeoglobus fulgidus Length = 238 Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 112/234 (47%), Gaps = 61/234 (26%) Query: 14 VILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAARGKVI 73 ++ +V+DL V+YG E ++G++L ++ GEI +++G+NGAGKST ISGL+K G++I Sbjct: 4 MLFEVKDLHVAYGSYEVLRGVNLEVDRGEIVSIIGSNGAGKSTLFRTISGLIKPRSGRII 63 Query: 74 FNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYT-RKDKAAVX------- 125 F GEDI +SP IV G+ EGR L++ +NL LG YT RKDK Sbjct: 64 FEGEDIAGKSPEEIVSIGITHCPEGRFLFPELSVYKNLLLGYYTKRKDKKGFKERLEYVF 123 Query: 126 -IFRIVKE-IN------------------------------------------------- 134 IF ++KE IN Sbjct: 124 EIFPVLKERINQRAGTMSGGEQQMLAIARALMPSPKLLLLDEPSLGLSPKLSWSVFEVLK 183 Query: 135 --KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 186 K +L+ EQN L+++ R YV+E G+I L +L NP+V AYLG Sbjct: 184 EIKKDTAILVSEQNASLCLKVSDRTYVMELGEIRLSGKADEVLANPEVKRAYLG 237 >DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 238 Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 116/235 (49%), Gaps = 60/235 (25%) Query: 12 PNVILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGAGKSTSLLAISGLVKAARGK 71 P +LQV DL V+YG +EAV G++L++ G+I +++GANGAGKST L A+ G + +RG Sbjct: 5 PGALLQVDDLHVAYGRVEAVTGVNLSVEAGQIVSVIGANGAGKSTLLAALIGALP-SRGV 63 Query: 72 VIFNGEDITQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRK---DKAAVXIFR 128 + + G D+ Q V +G+ V E R ++T+E+NL LGAYT++ +FR Sbjct: 64 IRYAGRDVRQMPLEDRVAAGMTLVPERRELFGSMTVEDNLQLGAYTQRAGMQSGLADVFR 123 Query: 129 -------------------------------------------------IVKEI------ 133 IV++I Sbjct: 124 RFPRLLERRKQLAGTLSGGEQQMLAIGRALMARPKLLLLDEPSLGLAPLIVRDILHIVAE 183 Query: 134 -NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLGG 187 +G+TVLLVEQN R AL I+ GYVLE G + LE A L +P VV +YLGG Sbjct: 184 LRDSGVTVLLVEQNARAALAISDYGYVLEGGHVKLEGPAARLADDPAVVASYLGG 238