BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0063.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1141 [J] COG0009 Putative translation factor (SUA5) Rso Ralst... 294 8e-80 NMB0436 [J] COG0009 Putative translation factor (SUA5) Nme Neiss... 262 3e-70 NMA2049 [J] COG0009 Putative translation factor (SUA5) NmA Neiss... 258 4e-69 VC1178 [J] COG0009 Putative translation factor (SUA5) Vch Vibrio... 251 1e-66 yciO [J] COG0009 Putative translation factor (SUA5) Eco Escheric... 251 1e-66 >RSc1141 [J] COG0009 Putative translation factor (SUA5) Rso Ralstonia solanacearum Length = 207 Score = 294 bits (753), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 144/208 (69%), Positives = 170/208 (81%), Gaps = 1/208 (0%) Query: 1 MSQFFQIHPDNPQLRLVKQAAQIIHGGGIVALPTDSCYALVCQLDNKDAVERLRRIRGVD 60 MSQFFQIHP PQ RL++QA +II GG++ALPTDSCYAL C LD+K AVERLRR+RG+D Sbjct: 1 MSQFFQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGID 60 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGPYTFILEATKEVPRRLSHPSRKTIG 120 EKHHLTL+CRDLSE+A +A+VDNRQYR +KAATPGP+ F+LEAT+EVPRRLSHPSRKTIG Sbjct: 61 EKHHLTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATREVPRRLSHPSRKTIG 120 Query: 121 LRVPENQIAHALLAELGEPLIGTTLILPDQEDALTDAEEIRERLEKQIELVIDSGACSLE 180 LRVP++ I AL+AELGEPL+ TL LP E L +A+ IR LE+Q+ELVID G E Sbjct: 121 LRVPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGGPAPAE 180 Query: 181 PTTVIDLSDDNEPVLVRQGRGDAAPFGL 208 PTTVIDL+ EP LVR+GRGD A GL Sbjct: 181 PTTVIDLT-GGEPELVRRGRGDPARVGL 207 >NMB0436 [J] COG0009 Putative translation factor (SUA5) Nme Neisseria meningitidis MC58 Length = 213 Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 136/208 (65%), Positives = 163/208 (78%), Gaps = 2/208 (0%) Query: 1 MSQFFQIHPDNPQLRLVKQAAQIIHGGGIVALPTDSCYALVCQLDNKDAVERLRRIRGVD 60 M+QFF IHPDNPQ RL+KQA +I++ GG+V PTDSCYAL C+L +K A+ER+ IR +D Sbjct: 8 MAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKID 67 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGPYTFILEATKEVPRRLSHPSRKTIG 120 KHHLTL+C DLSE+ YAKVDN Q+R LKAATPGPYTFIL+ATK+VP R HP RKTIG Sbjct: 68 LKHHLTLMCADLSELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIG 127 Query: 121 LRVPENQIAHALLAELGEPLIGTTLILPDQEDALTDAEEIRERLEKQIELVIDSGACSLE 180 LR+P+N IA ALL ELGEPL+ TL+LP+ + LTD EIRERLE ++LVID G C E Sbjct: 128 LRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTE 187 Query: 181 PTTVIDLSDDNEPVLVRQGRGDAAPFGL 208 PTTV+D++D E LVRQG GD A FGL Sbjct: 188 PTTVVDMTDGTE--LVRQGCGDTAVFGL 213 >NMA2049 [J] COG0009 Putative translation factor (SUA5) NmA Neisseria meningitidis Z2491 Length = 206 Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 134/208 (64%), Positives = 162/208 (77%), Gaps = 2/208 (0%) Query: 1 MSQFFQIHPDNPQLRLVKQAAQIIHGGGIVALPTDSCYALVCQLDNKDAVERLRRIRGVD 60 M+QFF IHPDNPQ RL+KQA +I++ GG+V PTDSCYAL C+L +K A+ER+ IR +D Sbjct: 1 MAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKID 60 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGPYTFILEATKEVPRRLSHPSRKTIG 120 KHHLTL+C DLSE+ YAK+DN Q+R LKAATPGPYTFIL+ATK+VP R HP RKTIG Sbjct: 61 LKHHLTLMCADLSELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIG 120 Query: 121 LRVPENQIAHALLAELGEPLIGTTLILPDQEDALTDAEEIRERLEKQIELVIDSGACSLE 180 LR+P+N IA ALL ELGEPL+ TL+LP+ + LTD EIRE LE ++LVID G C E Sbjct: 121 LRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEIRECLEHAVDLVIDGGWCGTE 180 Query: 181 PTTVIDLSDDNEPVLVRQGRGDAAPFGL 208 PTTV+D++D E LVRQG GD A FGL Sbjct: 181 PTTVVDMTDGTE--LVRQGCGDTAVFGL 206 >VC1178 [J] COG0009 Putative translation factor (SUA5) Vch Vibrio cholerae Length = 206 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/206 (58%), Positives = 153/206 (74%), Gaps = 1/206 (0%) Query: 1 MSQFFQIHPDNPQLRLVKQAAQIIHGGGIVALPTDSCYALVCQLDNKDAVERLRRIRGVD 60 MSQFF +HP+NPQ RL+ QA II GG+V PTDS YAL CQL+NK +ER+ +IR +D Sbjct: 1 MSQFFYVHPENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLD 60 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGPYTFILEATKEVPRRLSHPSRKTIG 120 +KH+ TLLCRDLSE++ YA+VDN +RLLK TPGPYTFI + TKEVPRRL + RKTIG Sbjct: 61 DKHNFTLLCRDLSELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIG 120 Query: 121 LRVPENQIAHALLAELGEPLIGTTLILPDQEDALTDAEEIRERLEKQIELVIDSGACSLE 180 +RVP N+IA LL LGEPL+ T+LILP + +D EEIR+RLE ++++++ G + Sbjct: 121 IRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQQ 180 Query: 181 PTTVIDLSDDNEPVLVRQGRGDAAPF 206 PTTVID SDD E V+ R G GD PF Sbjct: 181 PTTVIDFSDD-EVVVARVGAGDPTPF 205 >yciO [J] COG0009 Putative translation factor (SUA5) Eco Escherichia coli K12 Length = 218 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 156/206 (75%), Gaps = 1/206 (0%) Query: 1 MSQFFQIHPDNPQLRLVKQAAQIIHGGGIVALPTDSCYALVCQLDNKDAVERLRRIRGVD 60 MSQFF IHPDNPQ RL+ QA +I+ GG++ PTDS YAL C++++K+A+ER+ RIR + Sbjct: 13 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP 72 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGPYTFILEATKEVPRRLSHPSRKTIG 120 + H+ TL+CRDLSE++ Y+ VDN +RL+K TPG YTFIL+ TKEVPRRL RKTIG Sbjct: 73 DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG 132 Query: 121 LRVPENQIAHALLAELGEPLIGTTLILPDQEDALTDAEEIRERLEKQIELVIDSGACSLE 180 +RVP N IA ALL LGEP++ T+L+LP E +D EEI++RLEKQ++L+I G + Sbjct: 133 MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK 192 Query: 181 PTTVIDLSDDNEPVLVRQGRGDAAPF 206 PTTVIDL+DD PV+VR+G GD PF Sbjct: 193 PTTVIDLTDDT-PVVVREGVGDVKPF 217