BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0055.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1977 [R] COG1286 Uncharacterized membrane protein, required f...   138   5e-33
HI1206 [R] COG1286 Uncharacterized membrane protein, required fo...    90   2e-18
PM0702 [R] COG1286 Uncharacterized membrane protein, required fo...    87   1e-17
PA3109 [R] COG1286 Uncharacterized membrane protein, required fo...    87   1e-17
STM2363 [R] COG1286 Uncharacterized membrane protein, required f...    74   1e-13

>RSc1977 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Rso Ralstonia solanacearum
          Length = 165

 Score =  138 bits (348), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 1/162 (0%)

Query: 2   TIFDYLVLLVLACSVVISMLRGLVREVLSLASWIIALVVANAYGEALAQMLPDVIPGES- 60
           T FDY VL ++  S ++ + RGL+RE+L+LA W+ A  VA  +    A  +P+ +PG   
Sbjct: 4   TFFDYGVLFIVVASALVGLFRGLIREILALAGWLFAAWVAYTFSGVAAGWMPESLPGGPV 63

Query: 61  TRLIVGFIVLFIGTRLLMGLVTRAMSEVVKASGLSLIDRSLGAVFGLARGAVIVLAVVLL 120
            R ++GF++LF+ T +   LV   +S V++++GL   DR LG VFGLARG VI+L ++ +
Sbjct: 64  ARTVLGFVLLFVVTVIGTSLVGALLSAVLESAGLKPADRGLGMVFGLARGGVIILVLMTV 123

Query: 121 CGTTSIPQQPFWKEARFSALAETAAETAKPYLPGQFAQHVHF 162
            G TS+P+QPFW++A     AE AA  AKP LP   A+++H+
Sbjct: 124 AGFTSVPEQPFWRDALTRPYAEEAARAAKPLLPPDVAKYIHY 165


>HI1206 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Hin Haemophilus influenzae
          Length = 163

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 2/125 (1%)

Query: 13  ACSVVISMLRGLVREVLSLASWIIALVVANAYGEALAQMLPDVIPGESTRLIVGFIVLFI 72
           A S+++S+LRG VREVLSL SWI+A +VA+ +   LA  L   I     R      +LF+
Sbjct: 11  AFSILVSLLRGFVREVLSLGSWIVAFIVASQFYPYLAAYLTQ-IESMYIRNGTAIAILFV 69

Query: 73  GTRLLMGLVTRAMSEVVKASGLSLIDRSLGAVFGLARGAVIVLAVVLLCGT-TSIPQQPF 131
            T ++  +V   +S++V  +GLS  DR LGA FGL RGA+IV A++    T T+  Q  +
Sbjct: 70  LTLIVGAIVNYVISQLVDKTGLSGTDRVLGAAFGLVRGALIVAALLFFMDTFTNFEQTDW 129

Query: 132 WKEAR 136
           WKE++
Sbjct: 130 WKESQ 134


>PM0702 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Pmu Pasteurella multocida
          Length = 163

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 86/135 (63%), Gaps = 6/135 (4%)

Query: 5   DYLVLLVLACSVVISMLRGLVREVLSLASWIIALVVANAYGEALAQMLPDVIPGESTRLI 64
           DY+++ ++A S++IS+LRG +REV+S+ASW++A  VAN +   LA  L  +   ES  L 
Sbjct: 3   DYIIIAIIAFSIIISLLRGFIREVMSVASWVVAFFVANHFYPYLANYLTQI---ESLYLR 59

Query: 65  VG--FIVLFIGTRLLMGLVTRAMSEVVKASGLSLIDRSLGAVFGLARGAVIVLAVVLLCG 122
            G    +LF+ T ++ G+V   + E+V  +GL+  DR LGA FGL RG +IV A++    
Sbjct: 60  NGTAIAILFVATLIVGGIVNHILGELVDKTGLTGTDRVLGACFGLIRGVLIVAALLFFMD 119

Query: 123 T-TSIPQQPFWKEAR 136
           T T+  Q  +WKE++
Sbjct: 120 TFTNFSQTVWWKESK 134


>PA3109 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Pae Pseudomonas aeruginosa
          Length = 180

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 90/153 (58%)

Query: 2   TIFDYLVLLVLACSVVISMLRGLVREVLSLASWIIALVVANAYGEALAQMLPDVIPGEST 61
           T  D+ ++ ++  S +IS+ RG V+E LSL +WI+A  VA  +G ALAQ L + I   S 
Sbjct: 4   TWVDWTMVAIIVVSSLISLSRGFVKEALSLLTWIVAGAVAWMFGGALAQHLGEYIQTPSA 63

Query: 62  RLIVGFIVLFIGTRLLMGLVTRAMSEVVKASGLSLIDRSLGAVFGLARGAVIVLAVVLLC 121
           R+I    +LFI T LL  LV   + E+++ +GLS  DR LG VFG ARG ++V+ +V L 
Sbjct: 64  RIIAACALLFIATLLLGALVNYLIGELIRVTGLSGTDRFLGMVFGGARGVLLVVLLVGLL 123

Query: 122 GTTSIPQQPFWKEARFSALAETAAETAKPYLPG 154
               + Q P+W+++         A+ +K ++ G
Sbjct: 124 SLAPVQQDPWWQQSVLMPHFLMVADWSKNFILG 156


>STM2363 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Sty Salmonella typhimurium LT2
          Length = 162

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 5   DYLVLLVLACSVVISMLRGLVREVLSLASWIIALVVANAYGEALAQMLPDVIPGESTRLI 64
           DY ++ V+A S ++S++RG VRE LSL +W  A  VA+ Y   L+         E  R  
Sbjct: 5   DYAIIAVIAFSCLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTG-FEDELVRNG 63

Query: 65  VGFIVLFIGTRLLMGLVTRAMSEVVKASGLSLIDRSLGAVFGLARGAVIVLAVVLLCGT- 123
           +   VLFI T ++  +V   + ++V+ +GLS  DR LG  FG  RGA+IV A++    T 
Sbjct: 64  IAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGICFGALRGALIVAAILFFLDTF 123

Query: 124 TSIPQQPFWKEAR 136
           T + +   W +++
Sbjct: 124 TGLSKSEDWSKSQ 136