BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0034.p         (106 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1560 [S] COG4323 Predicted membrane protein Rso Ralstonia sol...   138   3e-33
PA3216 [S] COG4323 Predicted membrane protein Pae Pseudomonas ae...   115   2e-26
CC3163 Non COG                                                        103   9e-23

>RSc1560 [S] COG4323 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 105

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 75/98 (76%)

Query: 9   KYTSFDEFYPNYLSEHANRTCRQLHFAGSTLALLCLGMLLLTHNFWWLAAEVLCGYGFAW 68
           ++ SF EFYP YL EH NRTCR+LHFAGSTLAL+CL  L+ T + WWL A  + GY FAW
Sbjct: 8   RFGSFAEFYPYYLGEHRNRTCRRLHFAGSTLALVCLIQLVFTGSLWWLLAAAVSGYAFAW 67

Query: 69  IGHFRFERNRPASFRQPLYSFMGDWVMYWQLLTGQISF 106
           +GHF FE+NRPA+FR P+YS MGDWVMY  +  G+I F
Sbjct: 68  VGHFAFEKNRPATFRHPIYSLMGDWVMYRDIWIGKIPF 105


>PA3216 [S] COG4323 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 105

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 69/99 (69%)

Query: 8   DKYTSFDEFYPNYLSEHANRTCRQLHFAGSTLALLCLGMLLLTHNFWWLAAEVLCGYGFA 67
           +++ SF EFYP YL EH+N  CR+LH+ GS L L  L   + +  + WL A  L GYGFA
Sbjct: 7   ERFHSFAEFYPYYLQEHSNAVCRRLHYVGSLLVLAVLFHAVASQQWLWLLALPLVGYGFA 66

Query: 68  WIGHFRFERNRPASFRQPLYSFMGDWVMYWQLLTGQISF 106
           W+GHF FE+NRPA+F+ PL+SFMGDWVM     TG+I F
Sbjct: 67  WVGHFVFEKNRPATFKYPLWSFMGDWVMLKDAFTGRIRF 105


>CC3163 Non COG
          Length = 208

 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 9   KYTSFDEFYPNYLSEHANRTCRQLHFAGSTLALLCLGMLLLTHNFWWLAAEVLCGYGFAW 68
           +Y SF  FYP Y++EHAN   R+LH  G++L ++CL + +     +++AA V+ GYGFAW
Sbjct: 112 RYKSFAAFYPFYMTEHANPVSRRLHVVGTSLVIVCLVLGVFRDWRFFIAAPVI-GYGFAW 170

Query: 69  IGHFRFERNRPASFRQPLYSFMGDWVMYWQLLTGQISF 106
           IGHF FE+NRPA+F+ P+YS MGD+ ++++ +TG+  F
Sbjct: 171 IGHFVFEKNRPATFKYPVYSLMGDFRLWFETVTGRRKF 208