BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0008.p (214 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0292 [TK] COG2197 Response regulator containing a CheY-like r... 195 7e-50 RSc0192 [TK] COG2197 Response regulator containing a CheY-like r... 150 2e-36 PA0601 [TK] COG2197 Response regulator containing a CheY-like re... 147 1e-35 uvrY [TK] COG2197 Response regulator containing a CheY-like rece... 146 3e-35 ZuvrY [TK] COG2197 Response regulator containing a CheY-like rec... 146 3e-35 >RSc0292 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 210 Score = 195 bits (495), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 101/212 (47%), Positives = 142/212 (66%), Gaps = 3/212 (1%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQ 60 MIR+L+ DDH IVR GL+Q L++ DIEVA E A G EV+ + R D+V+LDI++P + Sbjct: 1 MIRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDR 60 Query: 61 DGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAAD 120 +G+D L+ ++Q P LPVL+LST+PE QYA R GA+GYL K + ++LV AIR + Sbjct: 61 NGIDTLKLVRQRHPDLPVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQ 120 Query: 121 GGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSP 180 G YVS +AE L L T + H+TLS RE+Q+F +A G+SV IA++L LS Sbjct: 121 GRRYVSPTVAELLIGGL---EKPTDQPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSV 177 Query: 181 NTVSTYRSRILEKTGAGNDVGIAMYAVRHQLL 212 TVSTYR+RILEK G ++ + YA+++ L+ Sbjct: 178 KTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209 >RSc0192 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 215 Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 135/212 (63%), Gaps = 3/212 (1%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQ 60 MIR+++ DDH ++R+G++ IL D EVA E +DG +VL+ R +++LD+++P + Sbjct: 1 MIRVMIADDHAVMRDGVRHILERAGDFEVACEASDGTQVLQLVRDHQPQVIVLDLSMPGR 60 Query: 61 DGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAAD 120 GL++LRQL + P + VL+L+ + E+QY AR +R GAA YL K + +LV A++K A Sbjct: 61 SGLELLRQLHDDHPTVRVLVLTMHAEEQYVARAFRAGAAAYLTKESAATELVTALQKVAR 120 Query: 121 GGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSP 180 GG YVS MAE LA L ++ AAH LS RE +V++ + G + EIA L +S Sbjct: 121 GGTYVSPPMAEKLAHSL---GETSDEAAHMRLSDREMEVYRRLVLGEPLTEIAASLCVSA 177 Query: 181 NTVSTYRSRILEKTGAGNDVGIAMYAVRHQLL 212 T+STY+ R+++K ++ + YA+RH+L Sbjct: 178 KTISTYKMRLMDKLQLSSEAALVRYAIRHRLF 209 >PA0601 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 210 Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 130/212 (61%), Gaps = 3/212 (1%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQ 60 +IR+L+ +DH IVREG+KQ++ D++V E +G ++L R ++VLLDI++P Sbjct: 2 VIRVLVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEQLLETLRGTPCEVVLLDISMPGV 61 Query: 61 DGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAAD 120 +GL+ + +++ +L+LS + E Q AAR ++GAAGY K +D L+ AIR+ A Sbjct: 62 NGLEAIPRIRALNEPPAILVLSMHDEAQMAARALKIGAAGYATKDSDPALLLTAIRRVAG 121 Query: 121 GGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSP 180 GG Y+ +A+ + E+ + R H LS RE+ VF+ + G +V EIA QL +S Sbjct: 122 GGRYIDPDLADRMVFEV---GLTDSRPPHALLSEREFSVFERLVQGANVNEIAQQLAVSN 178 Query: 181 NTVSTYRSRILEKTGAGNDVGIAMYAVRHQLL 212 T+ST+++R+++K A + + YA+ H+LL Sbjct: 179 KTISTHKARLMQKLNAHSVADLVRYAMEHRLL 210 >uvrY [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 218 Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 2/214 (0%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQ 60 MI +LL DDH +VR G+++IL D I+V E + G + ++ R A+D+VL+D+++P Sbjct: 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGI 60 Query: 61 DGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAAD 120 GL+ R++ + + ++ML+ + E A+ + GAAGYL+K A +++V+AIR Sbjct: 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120 Query: 121 GGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSP 180 G Y++ +A+ +A LS + +LS RE Q+ +I G+ V EI++QL LSP Sbjct: 121 GQRYIASDIAQQMA--LSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSP 178 Query: 181 NTVSTYRSRILEKTGAGNDVGIAMYAVRHQLLPA 214 TV++YR R+ K DV + A+RH L A Sbjct: 179 KTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNA 212 >ZuvrY [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 218 Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 2/214 (0%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQ 60 MI +LL DDH +VR G+++IL D I+V E + G + ++ R A+D+VL+D+++P Sbjct: 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGI 60 Query: 61 DGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAAD 120 GL+ R++ + + ++ML+ + E A+ + GAAGYL+K A +++V+AIR Sbjct: 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120 Query: 121 GGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSP 180 G Y++ +A+ +A LS + +LS RE Q+ +I G+ V EI++QL LSP Sbjct: 121 GQRYIASDIAQQMA--LSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSP 178 Query: 181 NTVSTYRSRILEKTGAGNDVGIAMYAVRHQLLPA 214 TV++YR R+ K DV + A+RH L A Sbjct: 179 KTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNA 212