BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0046.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1993 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 386 e-107 NMB0951 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 359 4e-99 NMA1146 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 359 4e-99 YPO1112 [C] COG0479 Succinate dehydrogenase/fumarate reductase, ... 322 4e-88 ZsdhB [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe... 320 2e-87 >RSc1993 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Rso Ralstonia solanacearum Length = 233 Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/230 (80%), Positives = 203/230 (88%), Gaps = 1/230 (0%) Query: 7 FKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVCGSDA 66 F++YRYDPDKD P MQ VEL ++MLLDAL ++K +D+S+A RRSCREGVCGSDA Sbjct: 5 FEVYRYDPDKDAAPRMQTYEVELDGHERMLLDALVKLKK-LDESIAFRRSCREGVCGSDA 63 Query: 67 MNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLINDSIP 126 MNINGKNGLAC TN+ EL E IVL+PLPGLPV+RDLIVDMT FF QY SIKP+LIND P Sbjct: 64 MNINGKNGLACLTNMRELPEKIVLRPLPGLPVVRDLIVDMTQFFNQYHSIKPFLINDEPP 123 Query: 127 PEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIADSRDE 186 PEKERLQSPE+REELDG+YECILCA CSTSCPSFWWNPDKFVGPAGLLQAYRFIADSRD+ Sbjct: 124 PEKERLQSPEEREELDGLYECILCASCSTSCPSFWWNPDKFVGPAGLLQAYRFIADSRDQ 183 Query: 187 ATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236 AT +RLD+LEDPYRLFRC +IMNCVDVCPKGLNP AIGKIKELMVRRAV Sbjct: 184 ATSERLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRAV 233 >NMB0951 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Nme Neisseria meningitidis MC58 Length = 235 Score = 359 bits (921), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 168/233 (72%), Positives = 200/233 (85%), Gaps = 2/233 (0%) Query: 5 LKFKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVCGS 64 + F+IYRY+PD D KPYMQ +EL+PTD LLDAL R+K+ DD+L+ RRSCREG+CGS Sbjct: 4 MSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKAQ-DDTLSFRRSCREGICGS 62 Query: 65 DAMNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLINDS 124 D MNINGKNGLAC T+L L +P+ ++PLPGLPVIRDLIVDMT FFKQY S+KPY++ND+ Sbjct: 63 DGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIVDMTQFFKQYHSVKPYVVNDN 122 Query: 125 -IPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIADS 183 I +KERLQ+ E+R+ELDG+YECILCACCST+CPSFWWNPDKFVGP+GLL AYRFIADS Sbjct: 123 PIDADKERLQTQEERKELDGLYECILCACCSTACPSFWWNPDKFVGPSGLLNAYRFIADS 182 Query: 184 RDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236 RD T +RLD+L DPYRLFRC +IMNCVDVCPK LNP AIGKIKE+M++RAV Sbjct: 183 RDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLNPTRAIGKIKEIMLKRAV 235 >NMA1146 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit NmA Neisseria meningitidis Z2491 Length = 235 Score = 359 bits (921), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 168/233 (72%), Positives = 200/233 (85%), Gaps = 2/233 (0%) Query: 5 LKFKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGVCGS 64 + F+IYRY+PD D KPYMQ +EL+PTD LLDAL R+K+ DD+L+ RRSCREG+CGS Sbjct: 4 MSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKAQ-DDTLSFRRSCREGICGS 62 Query: 65 DAMNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLINDS 124 D MNINGKNGLAC T+L L +P+ ++PLPGLPVIRDLIVDMT FFKQY S+KPY++ND+ Sbjct: 63 DGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIVDMTQFFKQYHSVKPYVVNDN 122 Query: 125 -IPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIADS 183 I +KERLQ+ E+R+ELDG+YECILCACCST+CPSFWWNPDKFVGP+GLL AYRFIADS Sbjct: 123 PIDADKERLQTQEERKELDGLYECILCACCSTACPSFWWNPDKFVGPSGLLNAYRFIADS 182 Query: 184 RDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236 RD T +RLD+L DPYRLFRC +IMNCVDVCPK LNP AIGKIKE+M++RAV Sbjct: 183 RDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLNPTRAIGKIKEIMLKRAV 235 >YPO1112 [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Ype Yersinia pestis Length = 238 Score = 322 bits (825), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 153/237 (64%), Positives = 189/237 (79%), Gaps = 6/237 (2%) Query: 5 LKFKIYRYDPDKDEKPYMQDLTVELKPT-DKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L+F IYRY+PD D P+MQD T++ + D MLLDAL ++K + D +L+ RRSCREGVCG Sbjct: 3 LEFSIYRYNPDVDNAPHMQDYTLDAEEGRDMMLLDALIQLK-EKDPTLSFRRSCREGVCG 61 Query: 64 SDAMNINGKNGLACTTNLNEL---SEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 SD +N+NGKNGLAC T ++ L ++ IV++PLPGLPV+RDL+VDM F+ QY+ IKPYL Sbjct: 62 SDGLNMNGKNGLACITPISALQKGNKKIVIRPLPGLPVVRDLVVDMGQFYTQYEKIKPYL 121 Query: 121 INDSI-PPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRF 179 +ND PP +E LQSPEQR +LDG+YECILCACCSTSCPSFWWNPDKFVGPAGLL AYRF Sbjct: 122 LNDGKNPPAREHLQSPEQRAKLDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLAAYRF 181 Query: 180 IADSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236 + DSRD T RLDDL+D + +FRC SIMNCV VCPKGLNP AIG IK ++++R+ Sbjct: 182 LIDSRDTETASRLDDLDDAFSVFRCHSIMNCVSVCPKGLNPTKAIGHIKSMLLQRSA 238 >ZsdhB [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit EcZ Escherichia coli O157:H7 EDL933 Length = 238 Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 154/235 (65%), Positives = 187/235 (79%), Gaps = 6/235 (2%) Query: 5 LKFKIYRYDPDKDEKPYMQDLTVELKPT-DKMLLDALQRIKSDVDDSLALRRSCREGVCG 63 L+F IYRY+PD D+ P MQD T+E + D MLLDAL ++K + D SL+ RRSCREGVCG Sbjct: 3 LEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61 Query: 64 SDAMNINGKNGLACTTNLNELSEP---IVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120 SD +N+NGKNGLAC T ++ L++P IV++PLPGLPVIRDL+VDM F+ QY+ IKPYL Sbjct: 62 SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121 Query: 121 INDSI-PPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRF 179 +N+ PP +E LQ PEQRE+LDG+YECILCACCSTSCPSFWWNPDKF+GPAGLL AYRF Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181 Query: 180 IADSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRR 234 + DSRD T RLD L D + +FRC SIMNCV VCPKGLNP AIG IK ++++R Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236