BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0045.p (592 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1994 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 974 0.0 NMA1145 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 803 0.0 NMB0950 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 801 0.0 PA1583 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f... 676 0.0 XF1072 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f... 667 0.0 >RSc1994 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Rso Ralstonia solanacearum Length = 592 Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/592 (78%), Positives = 530/592 (89%) Query: 1 VAAIKSTIPTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 + A+K+ +P R+FD VIVGAGG+GMRASLQLAEAGL+VAVLSKVFPTRSHTVAAQGGIGA Sbjct: 1 MVAVKTGLPRRKFDVVIVGAGGAGMRASLQLAEAGLSVAVLSKVFPTRSHTVAAQGGIGA 60 Query: 61 SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNADGTIY 120 SLGNMSEDNW++H +DT+KGSD+LGDQDAIEFMCR+AP+ VYELEHFGMPFDRNADGTIY Sbjct: 61 SLGNMSEDNWHYHFYDTIKGSDWLGDQDAIEFMCRQAPQVVYELEHFGMPFDRNADGTIY 120 Query: 121 QRPFGGHSANFGEKPVARACAAADRTGHALLHTLYQRNVRAKTHFFVEWMAIDVIRDNEG 180 QRPFGGH++N+GEKPV RACAAADRTGHALLHTLYQRNVRAKTHFFVEWMA+D+IRD +G Sbjct: 121 QRPFGGHTSNYGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRDQDG 180 Query: 181 DVIGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240 DV+GV ALEMETGE+ +L AKTTLFATGGAGRI+AASTNAFINTGDG+GMAARAG+PL+D Sbjct: 181 DVLGVTALEMETGEVYILEAKTTLFATGGAGRIYAASTNAFINTGDGLGMAARAGIPLED 240 Query: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQ 300 MEFWQFHPTGVAGAGVLITEGVRGEGGIL N +GERFMERYAPTLKDLAPRDFVSRSMDQ Sbjct: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQ 300 Query: 301 EIKEGRGVGQHKDHVLLDLRHIGADTIQKRLPSILEIAHKFANVDATKEPIPVVPTIHYQ 360 EIKEGRG G + D+VLLDL H+GA+TI KRLPSI EI KFANVDA KEPIPVVPTIHYQ Sbjct: 301 EIKEGRGCGPNGDYVLLDLTHVGAETIMKRLPSIREIGLKFANVDAIKEPIPVVPTIHYQ 360 Query: 361 MGGIPTNVYGQVVAPKNGSYKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAG 420 MGGIPTN +GQVV PKNGS EVV G YAIGEC+CVSVHGANRLGTNSLLDLVVFGR+AG Sbjct: 361 MGGIPTNYHGQVVVPKNGSPNEVVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRSAG 420 Query: 421 NHIVESRLQDRSHKPIPSDATDRAMERVARLETSTGSERVQDVANAIRATMQHYCGVFRT 480 NHIV L++R HKP+P+DA DRA+ R+A+L++S+ E QDVAN IR MQ + GVFRT Sbjct: 421 NHIVAQNLKNREHKPLPADAADRALARLAKLDSSSSGEYAQDVANDIRRNMQAHAGVFRT 480 Query: 481 DELLNEGRAKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKES 540 +L++EG +IME+ ER ++ KDKSKVFNTARVEALE+ NL+E AKAT+ SAAAR+ES Sbjct: 481 QKLMDEGVERIMEVTERAANIHLKDKSKVFNTARVEALEVANLVEVAKATMVSAAARRES 540 Query: 541 RGAHAHRDYEKRDDVEWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 RGAHAH D+ RDD WLKHTL++SEGNRL+YKPV M+PL+VE+ PKARTF Sbjct: 541 RGAHAHSDFPNRDDDNWLKHTLFYSEGNRLEYKPVQMKPLSVESVPPKARTF 592 >NMA1145 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit NmA Neisseria meningitidis Z2491 Length = 587 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/585 (65%), Positives = 472/585 (80%) Query: 8 IPTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSE 67 P R+FDAVIVG GG+G+RA+LQL+++GLN AVLSKVFPTRSHTVAAQGGI ASLGN+ E Sbjct: 3 FPVRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQE 62 Query: 68 DNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNADGTIYQRPFGGH 127 D W WHM+DTVKGSD+LGDQDAIEFMCR AP+AV ELEH GMPFDR G IYQRPFGGH Sbjct: 63 DRWDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGH 122 Query: 128 SANFGEKPVARACAAADRTGHALLHTLYQRNVRAKTHFFVEWMAIDVIRDNEGDVIGVVA 187 +A G++ V RACA ADRTGHA+LHTLYQ+NVRA T FFVEW A D+IRD GDV+GV A Sbjct: 123 TAEHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTA 182 Query: 188 LEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQFH 247 +EMETGE+ + HAK +FATGG GRI+A+STNA++NTGDG+G+ ARAG+PL+DMEFWQFH Sbjct: 183 MEMETGEVYIFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFH 242 Query: 248 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRG 307 PTGVAGAGVLITEGVRGEGGIL+N++GERFMERYAPT+KDLA RD VSR+M EI EGRG Sbjct: 243 PTGVAGAGVLITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRG 302 Query: 308 VGQHKDHVLLDLRHIGADTIQKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPTN 367 G++KDHVLL + HIGA+ I ++LP I EI+ +FA +D K+PIPVVPT HY MGGIPTN Sbjct: 303 CGKNKDHVLLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTN 362 Query: 368 VYGQVVAPKNGSYKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVESR 427 +G+VV P+ Y+ V+G+YA GECAC SVHGANRLGTNSLLDLVVFG+AAG+ +++ Sbjct: 363 YHGEVVVPQGDEYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFI 422 Query: 428 LQDRSHKPIPSDATDRAMERVARLETSTGSERVQDVANAIRATMQHYCGVFRTDELLNEG 487 + KP+P++A + +R+ RL+ T E V + ++ ++Q + GVFRTDE+L++G Sbjct: 423 KEQSDWKPLPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKG 482 Query: 488 RAKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAHR 547 ++M + ER K KDKSKV+NTAR+EALELDNLIE AKAT+ SA ARKESRGAHA Sbjct: 483 VREVMAIAERVKRTEIKDKSKVWNTARIEALELDNLIEVAKATLVSAEARKESRGAHASD 542 Query: 548 DYEKRDDVEWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 D+ +RDD W+KHTL+ S+ N L YKPV+ +PL+VE KP R + Sbjct: 543 DHPERDDENWMKHTLYHSDANTLSYKPVHTKPLSVEYIKPAKRVY 587 >NMB0950 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Nme Neisseria meningitidis MC58 Length = 587 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/585 (65%), Positives = 472/585 (80%) Query: 8 IPTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSE 67 P R+FDAVIVG GG+G+RA+LQL+++GLN AVLSKVFPTRSHTVAAQGGI ASLGN+ E Sbjct: 3 FPVRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQE 62 Query: 68 DNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNADGTIYQRPFGGH 127 D W WHM+DTVKGSD+LGDQDAIEFMCR AP+AV ELEH GMPFDR G IYQRPFGGH Sbjct: 63 DRWDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGH 122 Query: 128 SANFGEKPVARACAAADRTGHALLHTLYQRNVRAKTHFFVEWMAIDVIRDNEGDVIGVVA 187 +A G++ V RACA ADRTGHA+LHTLYQ+NVRA T FFVEW A D+IRD GDV+GV A Sbjct: 123 TAEHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTA 182 Query: 188 LEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQFH 247 +EMETGE+ + HAK +FATGG GRI+A+STNA++NTGDG+G+ ARAG+PL+DMEFWQFH Sbjct: 183 MEMETGEVYIFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFH 242 Query: 248 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRG 307 PTGVAGAGVLITEGVRGEGGIL+N++GERFMERYAPT+KDLA RD VSR+M EI EGRG Sbjct: 243 PTGVAGAGVLITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRG 302 Query: 308 VGQHKDHVLLDLRHIGADTIQKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPTN 367 G++KDHVLL + HIGA+ I ++LP I EI+ +FA +D K+PIPVVPT HY MGGIPTN Sbjct: 303 CGKNKDHVLLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTN 362 Query: 368 VYGQVVAPKNGSYKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVESR 427 +G+VV P+ Y+ V+G+YA GECAC SVHGANRLGTNSLLDLVVFG+AAG+ +++ Sbjct: 363 YHGEVVVPQGEDYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFI 422 Query: 428 LQDRSHKPIPSDATDRAMERVARLETSTGSERVQDVANAIRATMQHYCGVFRTDELLNEG 487 + KP+P++A + +R+ RL+ T E V + ++ ++Q + GVFRTDE+L++G Sbjct: 423 KEQSDWKPLPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKG 482 Query: 488 RAKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAHR 547 ++M + ER K KDKSKV+NTAR+EALELDNLIE AKAT+ SA ARKESRGAHA Sbjct: 483 VREVMAIAERVKRTEIKDKSKVWNTARIEALELDNLIEVAKATLVSAEARKESRGAHASD 542 Query: 548 DYEKRDDVEWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 D+ +RDD W+KHTL+ S+ N L YKPV+ +PL+VE KP R + Sbjct: 543 DHPERDDENWMKHTLYHSDINTLSYKPVHTKPLSVEYIKPAKRVY 587 >PA1583 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Pae Pseudomonas aeruginosa Length = 590 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/589 (55%), Positives = 431/589 (73%), Gaps = 2/589 (0%) Query: 6 STIPTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNM 65 ++I T FDA+IVG GG+GMRA+LQLA+ G AV++KVFPTRSHTV+AQGGI ++ + Sbjct: 2 ASIRTLSFDAIIVGGGGAGMRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASA 61 Query: 66 S-EDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNADGTIYQRPF 124 D+W WHM+DTVKGSDY+GDQDAIE+MC P+AV+ELEH G+PF R G IYQRPF Sbjct: 62 DPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPF 121 Query: 125 GGHSANFGEK-PVARACAAADRTGHALLHTLYQRNVRAKTHFFVEWMAIDVIRDNEGDVI 183 GG S +FG+ AR CAAADRTGHALLHTLYQ N++ T F EW A+D++++ +G V+ Sbjct: 122 GGQSKDFGKGGQAARTCAAADRTGHALLHTLYQANLKNGTSFLNEWYAVDLVKNQDGAVV 181 Query: 184 GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEF 243 G++A+ +ETGE + + +K + ATGGAGRI+A++TNA INTGDG+GMA RAG+P+QD+E Sbjct: 182 GIIAICIETGETVYIRSKAVVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEM 241 Query: 244 WQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIK 303 WQFHPTG+AGAGVL+TEG RGEGG LIN++GERFMERYAP KDLA RD V+RSM +E+ Sbjct: 242 WQFHPTGIAGAGVLVTEGCRGEGGYLINAHGERFMERYAPNAKDLAGRDVVARSMVKEVL 301 Query: 304 EGRGVGQHKDHVLLDLRHIGADTIQKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGG 363 G GVG +KDHVLL L H+G + + RLP I E++ FA+VD PIPV+PT HY MGG Sbjct: 302 AGNGVGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVIPTCHYMMGG 361 Query: 364 IPTNVYGQVVAPKNGSYKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHI 423 + TN++GQ + ++V+G++A+GE ACVSVHGANRLG NSLLDLVVFGRAAG H+ Sbjct: 362 VATNIHGQAITQDANGNDQIVEGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHL 421 Query: 424 VESRLQDRSHKPIPSDATDRAMERVARLETSTGSERVQDVANAIRATMQHYCGVFRTDEL 483 ++ + + + + +R+ + T E V + +++ MQ+Y GVFRT E Sbjct: 422 EKALKEGIDARGASESDLEASFKRLNGVNERTSGEEVAPLKRELQSCMQNYFGVFRTGEY 481 Query: 484 LNEGRAKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGA 543 + +G A++ +L ER +V DKS+ FNTAR+EALEL NL+E A+AT +A RKESRGA Sbjct: 482 MQKGIAQLADLRERIANVKINDKSQAFNTARIEALELQNLLEVAEATAIAAEHRKESRGA 541 Query: 544 HAHRDYEKRDDVEWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 HA D+E+RDD WL HTL+F R+ + VN P TV F+PK RT+ Sbjct: 542 HAREDFEERDDENWLCHTLYFPGEKRVSKRSVNFAPKTVPAFEPKVRTY 590 >XF1072 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Xfa Xylella fastidiosa 9a5c Length = 596 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/592 (57%), Positives = 418/592 (70%), Gaps = 6/592 (1%) Query: 7 TIPTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMS 66 TI ++D V+VGAGG+G+RA+ LA+ GL L+KVFPTRSHTVAAQGGI A+LGNM Sbjct: 5 TITEHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLTKVFPTRSHTVAAQGGISAALGNMG 64 Query: 67 EDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNADGTIYQRPFGG 126 ED+W +H +DT+KGSD+LGDQDAIE+MCREA AV ELEH+G+PF R A G IYQRPFGG Sbjct: 65 EDDWRYHFYDTIKGSDWLGDQDAIEYMCREAIPAVIELEHYGVPFSRTAQGKIYQRPFGG 124 Query: 127 HSANFGEKPVA-RACAAADRTGHALLHTLYQRNVRAKTHFFVEWMAIDVIRDNEGDVIGV 185 + +GE P A R CAAADRTGHA+LHTLYQ+ + F +E+ A+D+I DNEG GV Sbjct: 125 MTTRYGEGPRAERTCAAADRTGHAMLHTLYQQALAHDARFMIEYFALDLIFDNEGVCCGV 184 Query: 186 VALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQ 245 +AL+M G + + A + ATGG GR + ++T+A TGDG G+ RAGLP+QDMEF Q Sbjct: 185 LALDMAEGSLHLFRAHGVVLATGGYGRTYFSATSAHTCTGDGGGLVMRAGLPMQDMEFVQ 244 Query: 246 FHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKEG 305 FHPTG+ GAG LITEGVRGEGGIL NSNGERFMERYAP KDLA RD VSRSM EI+EG Sbjct: 245 FHPTGIYGAGCLITEGVRGEGGILRNSNGERFMERYAPHYKDLASRDVVSRSMIIEIREG 304 Query: 306 RGVGQHKDHVLLDLRHIGADTIQKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIP 365 RGVG+HKDH+LLDL H+G IQ++LP I E A FA VD TK+PIPV+PT+HY MGGIP Sbjct: 305 RGVGEHKDHILLDLTHLGPSMIQEKLPGIAESARIFAGVDVTKQPIPVLPTVHYNMGGIP 364 Query: 366 TNVYGQVVAPKNGSYKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVE 425 TN +G+VV VV G+YA+GE ACVSVHGANRLG+NSLLDLVVFGRA N E Sbjct: 365 TNYHGEVVRKIGNDPDAVVPGLYAVGEAACVSVHGANRLGSNSLLDLVVFGRAVANRCAE 424 Query: 426 SRLQDRSHKPIPSDATDRAMERVARLETSTGSERVQDVANAIRATMQHYCGVFRTDELLN 485 + ++ HK +PSD+ D+A+ + +L + GS + + ++ TMQ VFRT + L Sbjct: 425 TIKPNQPHKVLPSDSCDKALGLLDKLRHADGSTPTAVIRDRMQRTMQSDASVFRTSKTLQ 484 Query: 486 EGRAKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHA 545 EG K+ E+ V D+S V+N+ +E EL NL+ A ATI SA RKESRGAHA Sbjct: 485 EGCEKMNEIFALFDDVKVSDRSLVWNSDLIETYELHNLLLNALATINSAEQRKESRGAHA 544 Query: 546 HRDYEKRDDVEWLKHTLWFSEGN---RLDYKPVNMQPLT--VETFKPKARTF 592 H DY RDD WLKHTL + DY+PV+M L+ V+ PK R + Sbjct: 545 HEDYPDRDDENWLKHTLVSVDEKGTCSFDYRPVHMYTLSKDVDVIPPKPRVY 596