BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0031.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1410 [N] COG1360 Flagellar motor protein Rso Ralstonia solana... 323 4e-88 YPO1665 [N] COG1360 Flagellar motor protein Ype Yersinia pestis 315 8e-86 STM1922 [N] COG1360 Flagellar motor protein Sty Salmonella typhi... 296 4e-80 motB [N] COG1360 Flagellar motor protein Eco Escherichia coli K12 290 2e-78 ZmotB [N] COG1360 Flagellar motor protein EcZ Escherichia coli O... 290 2e-78 >RSp1410 [N] COG1360 Flagellar motor protein Rso Ralstonia solanacearum Length = 314 Score = 323 bits (827), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 167/279 (59%), Positives = 210/279 (75%), Gaps = 7/279 (2%) Query: 9 IIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKTPLKV 68 I+++R KKGG GHHGGAWKIAYADFVTAMMAFFLLMWLL S K +L+ + YF+TPLKV Sbjct: 10 IVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYFRTPLKV 69 Query: 69 AMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSKRSVRAAQAELEKAERARLDEL 128 A+ GG+GSGD +++L G + +R++R ++++ A L++L Sbjct: 70 ALFGGAGSGDQSSILQGSPAIKQNMPQPNPSPSQTVQRQRNIR------DESDDAALNKL 123 Query: 129 KKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTREILRE 188 K+ I I+S+P + QFK+QLLID+TSEGLRIQIVD++NRPMFA ASA++QPY R ILRE Sbjct: 124 KQHIMEMIESNPVMNQFKHQLLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRE 183 Query: 189 IGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGGMDESKVLRV 248 +G LNDVPN ISLSGHTDAT Y++ + GYSNWELSADRANASRRELI+GGM KV RV Sbjct: 184 LGVALNDVPNPISLSGHTDATQYAT-QNGYSNWELSADRANASRRELIAGGMKPEKVARV 242 Query: 249 VGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVQNGG 287 VGL ++V LDK D FNPINRRISI+V+N + V+ GG Sbjct: 243 VGLEASVPLDKTDAFNPINRRISIVVLNNRTANAVRAGG 281 >YPO1665 [N] COG1360 Flagellar motor protein Ype Yersinia pestis Length = 427 Score = 315 bits (807), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 151/291 (51%), Positives = 212/291 (72%), Gaps = 16/291 (5%) Query: 7 RPIIV--KRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKT 64 P+I+ KR K G H+GG+WKIAYADF+TAMMAFFL+MWLL ++ +L IAEYF+T Sbjct: 6 HPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEYFRT 65 Query: 65 PLKVAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSKRSVRAAQAELEKAERAR 124 PLKVA+ G S + + +PGGG D T+Q G++RK N +E + E R Sbjct: 66 PLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQIN------------SEESRQEIHR 113 Query: 125 LDELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTRE 184 L++L+++++ I+S P LK + LLI++ EGLRIQI+D +NRPMF + SAQ++PY R+ Sbjct: 114 LNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRD 173 Query: 185 ILREIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGGMDESK 244 ILR I LND+PNK+SLSGHTD PY+ GE+GYSNWELSADRANASRREL++GG+DE K Sbjct: 174 ILRAIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGK 233 Query: 245 VLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELV--QNGGSSSLDV 293 +LRVVG++S + L ++ +P+NRRISI+V+NK+++ + +N + +LD+ Sbjct: 234 ILRVVGMASTMRLKEQASDDPVNRRISILVLNKQSQHDIEHENLDNRALDI 284 >STM1922 [N] COG1360 Flagellar motor protein Sty Salmonella typhimurium LT2 Length = 309 Score = 296 bits (758), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 148/293 (50%), Positives = 207/293 (70%), Gaps = 16/293 (5%) Query: 7 RPIIV---KRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFK 63 PI+V +R K GGG HG +WKIAYADF+TAMMAFFL+MWL+ ++ +L IAEYF+ Sbjct: 6 HPIVVVKRRRHKPHGGGAHG-SWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFR 64 Query: 64 TPLKVAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSKRSVRAAQAELEKAERA 123 TPL A+ GG+ ++ + +PGGG D T+Q+G++ K N K+ + E++ Sbjct: 65 TPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKK----------RMEQS 114 Query: 124 RLDELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTR 183 RL++L+ ++ I+S P L+ + L ID+ EGLRIQI+D +NRPMF SA+++PY R Sbjct: 115 RLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMR 174 Query: 184 EILREIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGGMDES 243 +ILR I LN +PN+ISL+GHTD PY++GEKGYSNWELSADRANASRREL++GG+D Sbjct: 175 DILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNG 234 Query: 244 KVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEE--LVQNGGSSSLDVS 294 KVLRVVG+++ + L P + INRRIS++V+NK+AE+ L +N S + VS Sbjct: 235 KVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQAEQAILHENAESQNEPVS 287 >motB [N] COG1360 Flagellar motor protein Eco Escherichia coli K12 Length = 308 Score = 290 bits (743), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 149/302 (49%), Positives = 205/302 (67%), Gaps = 14/302 (4%) Query: 9 IIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKTPLKV 68 I+VKR K G G+WKIAYADF+TAMMAFFL+MWL+ ++ +L IAEYF+TPL Sbjct: 9 IVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLAT 68 Query: 69 AMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSKRSVRAAQAELEKAERARLDEL 128 A+ GG ++ + +PGGG D T+ +G++ K N K+ + E++RL +L Sbjct: 69 AVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKK----------RMEQSRLRKL 118 Query: 129 KKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTREILRE 188 + ++ I+S P L+ + L ID+ EGLRIQI+D +NRPMF SA ++PY R+ILR Sbjct: 119 RGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRA 178 Query: 189 IGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGGMDESKVLRV 248 I LN +PN+ISLSGHTD PY+SGEKGYSNWELSADRANASRREL+ GG+D KVLRV Sbjct: 179 IAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRV 238 Query: 249 VGLSSAVLLDKEDPFNPINRRISIIVMNKKAEE--LVQNGGSSSLDVSS--EAEVKDGLS 304 VG+++ + L P + +NRRIS++V+NK+AE+ L +N S + VS+ + EV +S Sbjct: 239 VGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVS 298 Query: 305 EP 306 P Sbjct: 299 VP 300 >ZmotB [N] COG1360 Flagellar motor protein EcZ Escherichia coli O157:H7 EDL933 Length = 308 Score = 290 bits (743), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 149/302 (49%), Positives = 205/302 (67%), Gaps = 14/302 (4%) Query: 9 IIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKTPLKV 68 I+VKR K G G+WKIAYADF+TAMMAFFL+MWL+ ++ +L IAEYF+TPL Sbjct: 9 IVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLAT 68 Query: 69 AMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSKRSVRAAQAELEKAERARLDEL 128 A+ GG ++ + +PGGG D T+ +G++ K N K+ + E++RL +L Sbjct: 69 AVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKK----------RMEQSRLRKL 118 Query: 129 KKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTREILRE 188 + ++ I+S P L+ + L ID+ EGLRIQI+D +NRPMF SA ++PY R+ILR Sbjct: 119 RGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRA 178 Query: 189 IGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGGMDESKVLRV 248 I LN +PN+ISLSGHTD PY+SGEKGYSNWELSADRANASRREL+ GG+D KVLRV Sbjct: 179 IAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRV 238 Query: 249 VGLSSAVLLDKEDPFNPINRRISIIVMNKKAEE--LVQNGGSSSLDVSS--EAEVKDGLS 304 VG+++ + L P + +NRRIS++V+NK+AE+ L +N S + VS+ + EV +S Sbjct: 239 VGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVS 298 Query: 305 EP 306 P Sbjct: 299 VP 300