BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0011.p (266 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1627 [R] COG4105 DNA uptake lipoprotein Rso Ralstonia solanac... 336 3e-92 NMA0907 [R] COG4105 DNA uptake lipoprotein NmA Neisseria meningi... 248 7e-66 NMB0703 [R] COG4105 DNA uptake lipoprotein Nme Neisseria meningi... 245 8e-65 PA4545 [R] COG4105 DNA uptake lipoprotein Pae Pseudomonas aerugi... 191 1e-48 STM2663 [R] COG4105 DNA uptake lipoprotein Sty Salmonella typhim... 184 2e-46 >RSc1627 [R] COG4105 DNA uptake lipoprotein Rso Ralstonia solanacearum Length = 289 Score = 336 bits (862), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 154/253 (60%), Positives = 198/253 (78%) Query: 14 ILSLSACGLLPEQKDETIGWSASKLYSEAKEELTAGGYEKSIKYFEKLESRYPFGTYAQQ 73 L++SACG++PEQ+DET GWSA+KLYSEAK+ L G Y K++KY+EKLESRYPFG +AQQ Sbjct: 37 CLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGPFAQQ 96 Query: 74 AQMDIAYAYYRLNDQPQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTSIFDTFTDQ 133 AQ++ AYA Y+ + LAAVDRFI+LHPNHP+VDY YYL+GLINFND F++Q Sbjct: 97 AQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQ 156 Query: 134 DNTERDPKAVRDAFDSFKLLAERFPDSTYTPDALLRMKYLVNSMAQYDVHVANYYLRRGA 193 D +ERDPKA R A+D+FK L RFP+S Y PDA RM+Y+VN+MA+++V A YY RRGA Sbjct: 157 DLSERDPKAARAAYDAFKTLITRFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGA 216 Query: 194 YVSAVNRAQAAVKEYPDAPAVEEALFIMMRAYEAMGQKQLRDDTERVIQATYPNSPYYTG 253 Y++A NRAQ A+K+Y APAVEE L+IMM++YEA+G K LRDDTER+I+ YPNS + Sbjct: 217 YLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALGMKDLRDDTERIIKQNYPNSDFLLY 276 Query: 254 GPKAKDKPWWKIW 266 G + K KPW++ W Sbjct: 277 GQRKKAKPWYQWW 289 >NMA0907 [R] COG4105 DNA uptake lipoprotein NmA Neisseria meningitidis Z2491 Length = 267 Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 120/269 (44%), Positives = 179/269 (66%), Gaps = 6/269 (2%) Query: 1 MQKILLKLLTVAFILSLSAC---GLLPEQKDETIGWSASKLYSEAKEELTAGGYEKSIKY 57 M+KILL TV+ L+LSAC G + + T WS KLY+EA++EL + Y +++K Sbjct: 1 MKKILL---TVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKL 57 Query: 58 FEKLESRYPFGTYAQQAQMDIAYAYYRLNDQPQGLAAVDRFIKLHPNHPNVDYMYYLRGL 117 +E LESR+P +A+Q+Q+D AYAYY+ +++ + LAA++RF +LHP HPN+DY YLRGL Sbjct: 58 YEILESRFPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGL 117 Query: 118 INFNDRTSIFDTFTDQDNTERDPKAVRDAFDSFKLLAERFPDSTYTPDALLRMKYLVNSM 177 + FN+ S + QD ++RDPKA R+A+ +F L +RFP+S Y DA RM LV+++ Sbjct: 118 VLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNSKYAADATARMVKLVDAL 177 Query: 178 AQYDVHVANYYLRRGAYVSAVNRAQAAVKEYPDAPAVEEALFIMMRAYEAMGQKQLRDDT 237 ++ VA YY++RGAY++A NRAQ + Y + VEE+L I+ AY+ +G+ QL DT Sbjct: 178 GGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADT 237 Query: 238 ERVIQATYPNSPYYTGGPKAKDKPWWKIW 266 RV++ +P SP+ T + D PWW+ W Sbjct: 238 RRVLETNFPKSPFLTHAWQPDDMPWWRYW 266 >NMB0703 [R] COG4105 DNA uptake lipoprotein Nme Neisseria meningitidis MC58 Length = 267 Score = 245 bits (625), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 119/269 (44%), Positives = 178/269 (66%), Gaps = 6/269 (2%) Query: 1 MQKILLKLLTVAFILSLSAC---GLLPEQKDETIGWSASKLYSEAKEELTAGGYEKSIKY 57 M+KILL TV+ L+LSAC G + + T WS KLY+EA++EL + Y +++K Sbjct: 1 MKKILL---TVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKL 57 Query: 58 FEKLESRYPFGTYAQQAQMDIAYAYYRLNDQPQGLAAVDRFIKLHPNHPNVDYMYYLRGL 117 +E LESR+P +AQQ+Q+D AYAYY+ +++ + LAA+DRF +LHP HPN+DY YLRGL Sbjct: 58 YEILESRFPTSRHAQQSQLDTAYAYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGL 117 Query: 118 INFNDRTSIFDTFTDQDNTERDPKAVRDAFDSFKLLAERFPDSTYTPDALLRMKYLVNSM 177 + FN+ S + QD ++RDPKA R+A+ +F L +RFP+S Y DA RM LV+++ Sbjct: 118 VLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNSKYAADATARMVKLVDAL 177 Query: 178 AQYDVHVANYYLRRGAYVSAVNRAQAAVKEYPDAPAVEEALFIMMRAYEAMGQKQLRDDT 237 ++ VA YY++RGAY++A NRAQ + Y + VEE+L I+ AY+ + + +L DT Sbjct: 178 GGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPRLAADT 237 Query: 238 ERVIQATYPNSPYYTGGPKAKDKPWWKIW 266 RV++ +P SP+ ++ D PWW+ W Sbjct: 238 RRVLETNFPKSPFLKQPWRSDDMPWWRYW 266 >PA4545 [R] COG4105 DNA uptake lipoprotein Pae Pseudomonas aeruginosa Length = 341 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 143/235 (60%), Gaps = 2/235 (0%) Query: 20 CGLLPEQKDETIGWSASKLYSEAKEELTAGGYEKSIKYFEKLESRYPFGTYAQQAQMDIA 79 C E DE + S S+LY +A+++L Y ++ + LESRYPFG YA+QAQ+++ Sbjct: 18 CSSNKETVDENL--SESQLYQQAQDDLNNKSYNSAVTKLKALESRYPFGRYAEQAQLELI 75 Query: 80 YAYYRLNDQPQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTSIFDTFTDQDNTERD 139 YA Y+ + AA +RFI+LHP HPNVDY YYL+GL +F+ + F D T+RD Sbjct: 76 YANYKNMEPEAARAAAERFIRLHPQHPNVDYAYYLKGLSSFDQDRGLLARFLPLDMTKRD 135 Query: 140 PKAVRDAFDSFKLLAERFPDSTYTPDALLRMKYLVNSMAQYDVHVANYYLRRGAYVSAVN 199 P A RD+F+ F L RFP+S Y PDA RM YL N +A Y+VHV +YYL+R AYV+A N Sbjct: 136 PGAARDSFNEFAQLTSRFPNSRYAPDAKARMVYLRNLLAAYEVHVGHYYLKRQAYVAAAN 195 Query: 200 RAQAAVKEYPDAPAVEEALFIMMRAYEAMGQKQLRDDTERVIQATYPNSPYYTGG 254 R + V+ + + PAV + L IM+ AY +G L + ++ YP++ G Sbjct: 196 RGRYVVENFQETPAVGDGLAIMVEAYRRLGLDDLASTSLETLKLNYPDNASLKDG 250 >STM2663 [R] COG4105 DNA uptake lipoprotein Sty Salmonella typhimurium LT2 Length = 245 Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 143/243 (58%), Gaps = 1/243 (0%) Query: 6 LKLLTVAFILSLSACGLLPEQKDETIGWSASKLYSEAKEELTAGGYEKSIKYFEKLESRY 65 +K L A LSL G K+E +++Y+ A+++L G ++++I E L++RY Sbjct: 4 MKYLVAAATLSLFLAGC-SGSKEEVPDNPPNEIYATAQQKLQDGNWKQAITQLEALDNRY 62 Query: 66 PFGTYAQQAQMDIAYAYYRLNDQPQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTS 125 PFG Y+QQ Q+D+ YAYY+ D P AA+DRF++L+P HPN+DY+ Y+RGL N S Sbjct: 63 PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPNIDYVMYMRGLTNMALDDS 122 Query: 126 IFDTFTDQDNTERDPKAVRDAFDSFKLLAERFPDSTYTPDALLRMKYLVNSMAQYDVHVA 185 F D ++RDP+ R AF+ F L +P+S YT DA R+ +L + +A+Y+ VA Sbjct: 123 ALQGFFGVDRSDRDPQHARAAFNDFSKLVRSYPNSQYTTDATKRLVFLKDRLAKYEYSVA 182 Query: 186 NYYLRRGAYVSAVNRAQAAVKEYPDAPAVEEALFIMMRAYEAMGQKQLRDDTERVIQATY 245 YY RGA+V+ VNR + ++ YPD A +AL +M AY M D ++I A Sbjct: 183 EYYTARGAWVAVVNRVEGMLRNYPDTQATRDALPLMENAYRQMQLNAQADKVAKIIAANS 242 Query: 246 PNS 248 N+ Sbjct: 243 KNT 245