BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0061.p (315 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1342 [ET] COG0834 ABC-type amino acid transport/signal transdu... 311 1e-84 RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transd... 281 1e-75 PA5082 [ET] COG0834 ABC-type amino acid transport/signal transdu... 266 3e-71 RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transd... 257 2e-68 STM0665 [ET] COG0834 ABC-type amino acid transport/signal transd... 256 7e-68 >PA1342 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 302 Score = 311 bits (798), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 155/283 (54%), Positives = 198/283 (69%), Gaps = 1/283 (0%) Query: 13 ASVLMGSVHAEEFTGRLKKIKETGTLTLGVRDASIPFSYLDDKQSYQ-GYSIDLCLKAAT 71 A++L V A+E TG LKKIKETGT+TLG RDASIPFSYL + GYS DL LK Sbjct: 14 AALLSAPVVADELTGTLKKIKETGTITLGHRDASIPFSYLGTEPGKPIGYSHDLQLKVVE 73 Query: 72 AIQKKLGLTSLNVKMVPVTSATRIPLIANGTTDISCDSATNNMERQKQVAFAVTEFVTAN 131 A++K+L L L V+ VTS TRIPL+ NGT DI C S TNN ERQKQV F+V F Sbjct: 74 AVKKELNLPELKVRYNLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVDFSVGIFEVGT 133 Query: 132 RFLTKKAANLKTLDDLKGKTIVSTSGTSNLKQITTLNTERNLGMNILAAKDHAEAFLMVE 191 R L+KK AN+K DDLKGK +V+T+GT++ + + +N ++ +GMNI++AKDH E+F+M+E Sbjct: 134 RLLSKKTANIKDFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHGESFMMLE 193 Query: 192 TGRAVAFVMDDILLSSLAANSKAPGDYVVSSEALSVEPYGLILPLGDAAFKKVVDDALVN 251 +GRAVAF+MDD LL A +K P D+VV S E YG ++ GDAAFKKVVD A+ + Sbjct: 194 SGRAVAFMMDDALLYGEMAKAKKPDDWVVGGTPQSFEIYGCMVRKGDAAFKKVVDKAITD 253 Query: 252 VYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVFAKPTD 294 Y ++ KIY KWF PIPPKG+NLN PMS +L+ + A PTD Sbjct: 254 TYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELKKLIASPTD 296 >RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 313 Score = 281 bits (720), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 138/294 (46%), Positives = 189/294 (64%) Query: 1 MKLLKFAGVLVGASVLMGSVHAEEFTGRLKKIKETGTLTLGVRDASIPFSYLDDKQSYQG 60 M L K A VL VL + HA+E TG LKKIK+TGT+TLGVRD+SIPFSY G Sbjct: 16 MNLAKLATVLAAIGVLSSAAHAQELTGTLKKIKDTGTITLGVRDSSIPFSYNVGGVRTIG 75 Query: 61 YSIDLCLKAATAIQKKLGLTSLNVKMVPVTSATRIPLIANGTTDISCDSATNNMERQKQV 120 YS D+ K A++++L L L VK +PVTS RI L+ NGT D+ C S TNN+ERQKQ Sbjct: 76 YSYDVATKVVEAVKEQLKLKDLQVKEIPVTSQNRITLLQNGTIDLECGSTTNNLERQKQA 135 Query: 121 AFAVTEFVTANRFLTKKAANLKTLDDLKGKTIVSTSGTSNLKQITTLNTERNLGMNILAA 180 +F T F+ R + KK + +K DLKGK +V+T+GT++ + + +N E+ LGMNI++ Sbjct: 136 SFTNTIFIIGTRMMVKKDSGIKDWVDLKGKNVVTTAGTTSERLLRKMNDEKQLGMNIIST 195 Query: 181 KDHAEAFLMVETGRAVAFVMDDILLSSLAANSKAPGDYVVSSEALSVEPYGLILPLGDAA 240 KDH ++FL +E+GRAVAF+MDD LL A +K P D+VV + S E YG ++ DA Sbjct: 196 KDHGQSFLTLESGRAVAFMMDDALLYGERAKAKTPADWVVVGKPQSREAYGCMVRKDDAP 255 Query: 241 FKKVVDDALVNVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVFAKPTD 294 FK + D + + K I Y KWF+ P+PPKG+NL+ P+S ++A+ P D Sbjct: 256 FKTLADKTIAGMMKDGSINAEYKKWFEQPVPPKGLNLDFPLSDDMKALIKSPND 309 >PA5082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 299 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/294 (44%), Positives = 183/294 (62%), Gaps = 1/294 (0%) Query: 1 MKLLKFAGVLVGASVLMGSVHAEEFTGRLKKIKETGTLTLGVRDASIPFSYLDDKQSY-Q 59 MK L + + S+ +G+ AEE +G LKK+ + GT+TLG RDAS+PFSYL D Sbjct: 1 MKTLVSSTFALSLSLAIGAAQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPM 60 Query: 60 GYSIDLCLKAATAIQKKLGLTSLNVKMVPVTSATRIPLIANGTTDISCDSATNNMERQKQ 119 GYS++L K ++ LG L VK VTS TRIPL+ NGT D+ C S ERQKQ Sbjct: 61 GYSVELAGKVVERLKSTLGKPELKVKYNLVTSQTRIPLVQNGTVDLECGSTGVTAERQKQ 120 Query: 120 VAFAVTEFVTANRFLTKKAANLKTLDDLKGKTIVSTSGTSNLKQITTLNTERNLGMNILA 179 VAF+ + LT+K + + DDLKGK +V+T+GT+N + + N E LGMN+++ Sbjct: 121 VAFSYGFIYVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVS 180 Query: 180 AKDHAEAFLMVETGRAVAFVMDDILLSSLAANSKAPGDYVVSSEALSVEPYGLILPLGDA 239 AKDH EAF M+++GRAVAF MDD LL A ++ P D+VV E S E Y ++ D Sbjct: 181 AKDHGEAFQMLQSGRAVAFYMDDALLYGERAKARQPHDWVVVGEPQSREIYSCMVRKDDP 240 Query: 240 AFKKVVDDALVNVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVFAKPT 293 F +V++ L +Y+ +I+ IY +WFQ PIPPKG+NL PM+ +L+A+ PT Sbjct: 241 QFLALVNETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPT 294 >RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 301 Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/292 (41%), Positives = 185/292 (63%), Gaps = 3/292 (1%) Query: 4 LKFAGVLVGASVLMGSVHAEEFTGRLKKIKETGTLTLGVRDASIPFSYLDDKQSYQGYSI 63 L AG + ASVL AE G LKKI+++ T+ +GVR++SIPFSY D K G+S Sbjct: 10 LALAGA-IAASVL--PAQAEALDGTLKKIQDSNTILIGVRESSIPFSYRDSKNQIIGFSA 66 Query: 64 DLCLKAATAIQKKLGLTSLNVKMVPVTSATRIPLIANGTTDISCDSATNNMERQKQVAFA 123 DLC + A+++K+G L V+ +PVTS R L+ NG+ D+ C T+ R++Q AF+ Sbjct: 67 DLCSRVIDAVKQKVGKPDLQVQQIPVTSQNRTALVQNGSVDLECGVTTHLKSREQQTAFS 126 Query: 124 VTEFVTANRFLTKKAANLKTLDDLKGKTIVSTSGTSNLKQITTLNTERNLGMNILAAKDH 183 T F+ A R LT + +K DL GK++++ +GT++ + + +N E+ + MN+++ KD+ Sbjct: 127 TTFFIAATRLLTSTHSGVKDFPDLAGKSVITNAGTTSERILRKMNDEKKMNMNVISGKDY 186 Query: 184 AEAFLMVETGRAVAFVMDDILLSSLAANSKAPGDYVVSSEALSVEPYGLILPLGDAAFKK 243 E+FL +++GR AF+MDD+LL+ ++ P D+VV+ S E YG +L D FKK Sbjct: 187 GESFLTLQSGRVQAFMMDDVLLAGARTLAQKPADWVVTGTPQSFEAYGFMLRKDDPQFKK 246 Query: 244 VVDDALVNVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVFAKPTDS 295 +VDD L V K +I +YAKWF+ P+PPKGVN PMS QL+A++ P D+ Sbjct: 247 LVDDTLTGVMKRGEISTLYAKWFEKPVPPKGVNFGFPMSEQLKALYTSPNDT 298 >STM0665 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sty Salmonella typhimurium LT2 Length = 308 Score = 256 bits (653), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 184/298 (61%), Gaps = 4/298 (1%) Query: 1 MKLLKFAGVLVGASVLMGSVHAEEFT----GRLKKIKETGTLTLGVRDASIPFSYLDDKQ 56 M+L K ++ + G HAE+ L KI + G + +G R++S+PFSY D++Q Sbjct: 7 MQLRKLTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ 66 Query: 57 SYQGYSIDLCLKAATAIQKKLGLTSLNVKMVPVTSATRIPLIANGTTDISCDSATNNMER 116 GYS D A++KKL L VK++P+TS RIPL+ NGT D C S TNN+ER Sbjct: 67 KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNLER 126 Query: 117 QKQVAFAVTEFVTANRFLTKKAANLKTLDDLKGKTIVSTSGTSNLKQITTLNTERNLGMN 176 QKQ AF+ T FV R LTKK ++K DLKGK +V TSGT++ + LN E+ +GM Sbjct: 127 QKQAAFSDTIFVVGTRLLTKKGGDIKDFPDLKGKAVVVTSGTTSEILLHKLNEEQKMGMR 186 Query: 177 ILAAKDHAEAFLMVETGRAVAFVMDDILLSSLAANSKAPGDYVVSSEALSVEPYGLILPL 236 I++AKDH ++F +E+GRAVAF+MDD LL+ A +K P ++ + + S E YG +L Sbjct: 187 IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK 246 Query: 237 GDAAFKKVVDDALVNVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVFAKPTD 294 D FKK++DD + + +K + KWF++PIPPK +N+N +S +++A+F P D Sbjct: 247 NDPEFKKLMDDTIAQAQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKAPND 304