BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0051.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0490 [J] COG0102 Ribosomal protein L13 Rso Ralstonia solanace...   205   2e-53
NMB2057 [J] COG0102 Ribosomal protein L13 Nme Neisseria meningit...   184   4e-47
NMA0378 [J] COG0102 Ribosomal protein L13 NmA Neisseria meningit...   184   4e-47
PA4433 [J] COG0102 Ribosomal protein L13 Pae Pseudomonas aeruginosa   152   2e-37
HI1443 [J] COG0102 Ribosomal protein L13 Hin Haemophilus influenzae   146   9e-36

>RSc0490 [J] COG0102 Ribosomal protein L13 Rso Ralstonia solanacearum
          Length = 142

 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/111 (87%), Positives = 103/111 (92%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFI+VINA KLRVTG K T+K YYRHSGYPGGIYET F K
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIIVINAAKLRVTGAKTTDKKYYRHSGYPGGIYETTFGK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYA+G+HPH AQQP+ LE+
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEGSHPHEAQQPQVLEI 142


>NMB2057 [J] COG0102 Ribosomal protein L13 Nme Neisseria meningitidis MC58
          Length = 143

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 97/111 (87%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VA RLRGKHKPE+TPHVDTGD+I+VINA KLRVTG K  +K Y+RHSG+PGGIYE  F +
Sbjct: 32  VASRLRGKHKPEYTPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFRE 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQ++FPGRALE+AVKGMLPKGPLGYAMIKKLKVYA   H HAAQQPK LEL
Sbjct: 92  MQEQFPGRALEQAVKGMLPKGPLGYAMIKKLKVYAGAEHAHAAQQPKVLEL 142


>NMA0378 [J] COG0102 Ribosomal protein L13 NmA Neisseria meningitidis Z2491
          Length = 143

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 97/111 (87%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VA RLRGKHKPE+TPHVDTGD+I+VINA KLRVTG K  +K Y+RHSG+PGGIYE  F +
Sbjct: 32  VASRLRGKHKPEYTPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFRE 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQ++FPGRALE+AVKGMLPKGPLGYAMIKKLKVYA   H HAAQQPK LEL
Sbjct: 92  MQEQFPGRALEQAVKGMLPKGPLGYAMIKKLKVYAGAEHAHAAQQPKVLEL 142


>PA4433 [J] COG0102 Ribosomal protein L13 Pae Pseudomonas aeruginosa
          Length = 142

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 86/111 (77%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           +A RLRGKHKPE+TPHVDTGD+IVVINA ++RVTG K T+K YY HSG+PGGI   NF K
Sbjct: 32  IARRLRGKHKPEYTPHVDTGDYIVVINAEQVRVTGAKTTDKMYYHHSGFPGGIKSINFEK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           +  + P R +E AVKGMLPK PLG  M +KLKVY   +HPH AQQP+ L++
Sbjct: 92  LIAKAPERVIETAVKGMLPKNPLGRDMYRKLKVYKGASHPHTAQQPQELKI 142


>HI1443 [J] COG0102 Ribosomal protein L13 Hin Haemophilus influenzae
          Length = 142

 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 85/111 (76%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           +A RLRGKHK E+TPHVDTGD+I+VINA K+ VTG K T+K YY H+GY GGI +  F +
Sbjct: 32  LARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKE 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           M  R P   +E AVKGMLPKGPLG AM +KLKVYA G H HAAQQP+ L++
Sbjct: 92  MIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGGEHQHAAQQPQVLDI 142