BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0039.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso ...   109   4e-24
XF1954 [NT] COG0835 Chemotaxis signal transduction protein Xfa X...    65   8e-11
PA0410 [NT] COG0835 Chemotaxis signal transduction protein Pae P...    60   3e-09

>RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 181

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 12  RLHEFQARLLERMEAARDGSGMRDSRLGVMIGDRRCLVNLREAGEIVNLIAVTKVPLARD 71
           RLHE+QA L  R++ AR  + M DS LGV IGDR  L++L + GE+++     +VPL + 
Sbjct: 13  RLHEYQAMLARRLQEARAKASM-DSFLGVQIGDRHWLLSLGDTGEVLDYQPPARVPLTQP 71

Query: 72  WYLGLANVRGNLIGVVDLDRFLGGPSQTIGKESRVLVVSLALSGNTGFLLSRVLGLRHIQ 131
           WYLGL N RG L+GV+D   F G      G  ++++V+S         L+ RV GLR + 
Sbjct: 72  WYLGLVNARGTLLGVIDFALFSGEAPTVGGVGAKMVVLSKDPQRACAILVPRVAGLRSLS 131

Query: 132 EMTEQQSGD-----CGRRRYLDGDLNEWVEISLAEIVEDPRFLQVG 172
           ++   ++G         R + D     W E+S+ +++ DP FLQVG
Sbjct: 132 DLQAVEAGQEDGLPWQNRAWRDAQGTLWRELSVRQLLADPAFLQVG 177


>XF1954 [NT] COG0835 Chemotaxis signal transduction protein Xfa Xylella
           fastidiosa 9a5c
          Length = 176

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 38  LGVMIGDRRCLVNLREAGEIVNLIAVTKVPLARDWYLGLANVRGNLIGVVDLDRFLGGPS 97
           +G  IG R  + +  E  +IV +  VT VP A+ W LG+ N+RG+L+ V+DL +FL G  
Sbjct: 35  VGYRIGSRNLVSDFSEVVQIVPMPTVTLVPGAQPWLLGVGNLRGSLLPVIDLKQFLEGQR 94

Query: 98  QTIGKESRVLVVSLALSGNTGFLLSRVLGLRHIQEMTEQQSGDCGRRRY---------LD 148
             + +  RVL++ L +  N   ++  + G R        + GD  + RY         +D
Sbjct: 95  TVLREGQRVLIMRLGID-NAALVIDDLYGQRSFSLSNAIEIGDLAQGRYAHFIERVFLVD 153

Query: 149 GDLNEWVEISLAEIVEDPRFLQVG 172
           G    W   SL+ +   P F Q  
Sbjct: 154 G--QSWCVFSLSLLSRTPEFRQAA 175


>PA0410 [NT] COG0835 Chemotaxis signal transduction protein Pae Pseudomonas
           aeruginosa
          Length = 178

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 12  RLHEFQARLLERMEAARDGSGMRDSRLGVMIGDRRCLVNLREAGEIVNLIAVTKVPLARD 71
           R     A L  + EA +  SG     +G  +G R  +  + E GE+++    T++P  + 
Sbjct: 17  RCRRLAAGLPAQQEAVQSWSG-----IGFRMGGRFFVAPMGEVGEVLHEPRYTQLPGVKT 71

Query: 72  WYLGLANVRGNLIGVVDLDRFLGGPSQTIGKESRVLVVSLALSGNTGFLLSRVLGLRH-- 129
           W  G+ANVRG L+ ++DL  FLG     + K+ RVLVV   L    G ++  V G++H  
Sbjct: 72  WVKGVANVRGRLLPIMDLCGFLGTELSPLRKQRRVLVVE-HLDVFAGLIVDEVFGMQHFP 130

Query: 130 IQEMTEQQSG-DCGRRRYLDGDLN---EWVEISLAEIVEDPRFLQVGL 173
           +   +EQ    +   + ++ G  +    W+  S   + +   FL V +
Sbjct: 131 VDTFSEQLPPLEAALQPFIHGVFHREQPWLVFSPHALAQHQGFLDVAV 178