BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0038.p         (200 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0671 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    76   5e-14

>RSc0671 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 743

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 42  RLPFIGRQSLRAQTRILLLLLILALLSMFFFLWLGSKHYIHASLQAHITSDLVMHSQRIG 101
           R+PF+      AQ R+  + L+  L+++   ++  ++   + SLQ  I  D +MHSQR+ 
Sbjct: 64  RVPFV------AQQRVFTVGLLAGLVALLASIYFDNRQANNGSLQIEIAGDTLMHSQRLA 117

Query: 102 KAVPNAIQGNREAFNQLTESRKEFNQGLNVLMLGGEYQGYAIRKPEPEMRAVLVDVQKIW 161
           KAVP A+ GN  AF QL ESR      L  L  G   +G +      E +A+L    + W
Sbjct: 118 KAVPVALLGNESAFTQLKESRARLQSNLEALKTGSADRGLSA-TAGGEAQALLDKSIEEW 176

Query: 162 DHTDKAASTILKLQPELTGFGVTLARLRLLSPNLLDLSE 200
             ++K+A  +L  +  L   G TL      +P LL+ +E
Sbjct: 177 KRSEKSAQAVLAQEKTLVSVGKTLNVFNASNPELLEEAE 215