BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0024.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2223 [L] COG1722 Exonuclease VII small subunit Rso Ralstonia ...    97   1e-20
NMB0262 [L] COG1722 Exonuclease VII small subunit Nme Neisseria ...    63   2e-10
NMA2225 [L] COG1722 Exonuclease VII small subunit NmA Neisseria ...    60   1e-09

>RSc2223 [L] COG1722 Exonuclease VII small subunit Rso Ralstonia
          solanacearum
          Length = 94

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 58/73 (79%)

Query: 9  SQPASFEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVDSQVKVLEG 68
          + PAS+E AM ELE LV  ME+GELPLEAS+AAY+RGAELV++C   L++V+ QV+VL+G
Sbjct: 18 ATPASYEAAMAELETLVASMESGELPLEASLAAYRRGAELVRYCQQVLERVEQQVRVLDG 77

Query: 69 DMLKPLLGTGVGE 81
          D LKPL G G  E
Sbjct: 78 DALKPLAGEGTNE 90


>NMB0262 [L] COG1722 Exonuclease VII small subunit Nme Neisseria
          meningitidis MC58
          Length = 74

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 6  VKVSQPASFEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVDSQVKV 65
          +K + P SFEEA+  LE L   M+ GE+PLE ++AAY+ G ELV++C  +L +V+ +++V
Sbjct: 1  MKKNAPKSFEEALSRLESLTQSMQ-GEMPLEDALAAYQEGNELVRYCQTKLAQVEQKLQV 59

Query: 66 LEGDMLKPL 74
          L+ D LK L
Sbjct: 60 LDTDGLKEL 68


>NMA2225 [L] COG1722 Exonuclease VII small subunit NmA Neisseria
          meningitidis Z2491
          Length = 74

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 6  VKVSQPASFEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVDSQVKV 65
          +K + P SFEEA+  LE L   M+ GE+PLE ++AAY+ G ELV +C  +L +V+ +++V
Sbjct: 1  MKKNAPKSFEEALSRLESLTQAMQ-GEMPLEDALAAYQEGNELVIYCQTKLAQVEQKLQV 59

Query: 66 LEGDMLKPL 74
          L+ D LK L
Sbjct: 60 LDADGLKEL 68