BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0009.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...    87   1e-17
PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...    77   8e-15
RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...    72   4e-13
AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tu...    60   1e-09

>RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 508

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 10  LGGCAVGPDYVRPQLDLPTAYKEQ-GPWKKAEPGQIDSNQRWWEAYNDSVLNGLIEQANQ 68
           +  CAVGPDY RP  D+P  YKE  G WK   P    +  +WWE + D+ LN L EQ   
Sbjct: 26  MTACAVGPDYKRPSADVPQQYKETAGDWKVGTPSDAITRGKWWEIFGDAQLNALEEQVAA 85

Query: 69  ANQNIRLAEAQYRQAQA 85
           ANQNI +AEAQYRQAQA
Sbjct: 86  ANQNILVAEAQYRQAQA 102


>PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 498

 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 46/75 (61%)

Query: 11 GGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVLNGLIEQANQAN 70
          GGCA+GPDY RP L +P  +KE   W++AEP  +     WWE Y D  LN L     ++N
Sbjct: 17 GGCAIGPDYQRPDLAVPAEFKEAEGWRRAEPRDVFQRGAWWELYGDQTLNDLQMHLERSN 76

Query: 71 QNIRLAEAQYRQAQA 85
          Q +  + AQ+RQA+A
Sbjct: 77 QTLAQSVAQFRQAEA 91


>RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 483

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 2  SAIATAL--LLGGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVL 59
          +A+A +L  LL GC++ P Y RP +D+P  ++ + PW+ A+P        WW+ +ND  L
Sbjct: 9  TALAASLTTLLTGCSLAPPYARPAMDVPAHWQTEAPWRAAQPADDAPKGPWWQRFNDPQL 68

Query: 60 NGLIEQANQANQNIRLAEAQYRQAQA 85
          + L+EQA   NQ++++A +   QAQA
Sbjct: 69 DRLMEQALHENQSLKVAVSNLEQAQA 94


>AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 513

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 44/87 (50%), Gaps = 18/87 (20%)

Query: 6   TALLLGGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVLNGL--- 62
           T LLL GC VGPD+  P++ LP  + E G   K   G I S   WW A+NDS LNG    
Sbjct: 40  TMLLLSGCVVGPDHQTPEIQLPGKFAEAG---KTSNGDI-STVAWWNAFNDSRLNGYVST 95

Query: 63  -----------IEQANQANQNIRLAEA 78
                      IE+ NQA  NI +A A
Sbjct: 96  GLTQNLTVLQAIERINQAQSNITVAGA 122