BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0004.p         (369 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl113_1 [G] COG3090 TRAP-type C4-dicarboxylate transport system...   130   4e-30
SMc00266_1 [G] COG3090 TRAP-type C4-dicarboxylate transport syst...   126   9e-29
BH0702 [G] COG3090 TRAP-type C4-dicarboxylate transport system, ...    71   3e-12
HI0147_1 [G] COG3090 TRAP-type C4-dicarboxylate transport system...    71   5e-12

>AGl113_1 [G] COG3090 TRAP-type C4-dicarboxylate transport system, small
           permease component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 228

 Score =  130 bits (328), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 116/180 (64%)

Query: 32  MHVVAAVAAALVVVETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRGE 91
           M  + AVAA L+ +  G+LL GV  RYALH P++W DE AS  F+W +MLGA +A+DR E
Sbjct: 36  MRPIEAVAAVLLAMMIGLLLLGVTSRYALHLPIVWIDETASLCFLWFAMLGAAIAIDRSE 95

Query: 92  HMRLTAIVNKLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGLR 151
           H+RLT  +N    +   ++ ++A ++V  F+  II PA+++A E+  +T+ AL IP   R
Sbjct: 96  HLRLTLFLNMFPQRVLGYINSLALVLVATFLAAIIKPAMEYAIEEWVVTSAALNIPMSFR 155

Query: 152 AAALPVGAILMFLAAIARMASRSSVRQVLSAVAVVAVIGAVLWICKPALLAMGNYNLIVF 211
           AAALPVGA LM L  +  +  R ++R +++A   VAV   +L++  P L ++GN NL +F
Sbjct: 156 AAALPVGACLMLLLVLNNLFRRENLRDIIAAFVTVAVAAGLLYLASPMLESLGNLNLAIF 215


>SMc00266_1 [G] COG3090 TRAP-type C4-dicarboxylate transport system, small
           permease component Sme Sinorhizobium meliloti
          Length = 203

 Score =  126 bits (316), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 117/178 (65%)

Query: 31  VMHVVAAVAAALVVVETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRG 90
           +M  V A++A L+V    +LL+GV +RY L  P++W DE AS  F+WL+MLG+ +A+DR 
Sbjct: 26  LMRPVEALSAVLLVAIIAMLLSGVAFRYGLSRPIVWIDEAASIAFLWLAMLGSAIAIDRC 85

Query: 91  EHMRLTAIVNKLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGL 150
           EH+RLT ++N L ++ R + ET+  + +  F+L+++  A  +A+ +M IT+ AL IP G 
Sbjct: 86  EHLRLTILLNALGERARQFTETLGMVAIMSFLLVLLPAAYTYAAGEMDITSSALNIPAGY 145

Query: 151 RAAALPVGAILMFLAAIARMASRSSVRQVLSAVAVVAVIGAVLWICKPALLAMGNYNL 208
           RAAA+ VG +LM L A+A++   +    V+ +VA V  +  VLW+  PAL A GN N+
Sbjct: 146 RAAAIAVGMVLMVLLAVAQLLRTAKPLDVVVSVAFVLAVALVLWLLTPALSAFGNGNI 203


>BH0702 [G] COG3090 TRAP-type C4-dicarboxylate transport system, small
           permease component Bha Bacillus halodurans
          Length = 177

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 2/147 (1%)

Query: 29  RGVMH-VVAAVAAALVVVETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLAL 87
           + VM+ V+  VA+ L +V     L  V  RY L+DP  +++EL   L IW++MLG   A 
Sbjct: 9   KTVMNRVIMIVASILTIVLVLGALWQVFSRYVLNDPSTFTEELLRFLLIWVAMLGTTYAF 68

Query: 88  DRGEHMRLTAIVNKLSDKWRVWLETVAALIVCIFV-LMIIHPAVDHASEQMAITTPALEI 146
              EH+ +  + NKL D+ R +L+      +  F  L++I      ++  +   +P L I
Sbjct: 69  GSNEHLAIIYLKNKLRDEQRKYLQLFIDFTIIFFAGLILIKGGYSLSTSTLNQLSPILRI 128

Query: 147 PDGLRAAALPVGAILMFLAAIARMASR 173
           P G   A LP+    +    I  M  R
Sbjct: 129 PMGYIYAILPISGTFIVFYQIINMFER 155


>HI0147_1 [G] COG3090 TRAP-type C4-dicarboxylate transport system, small
           permease component Hin Haemophilus influenzae
          Length = 202

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 41  ALVVVETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRGEHMRLTAIVN 100
           AL +   G+L+A ++ R   H PLIWS+ELA  LF+++ MLG  +A+ + EH+ +  + N
Sbjct: 31  ALFIAIFGILIAQILSRQVFHSPLIWSEELAKLLFVYVGMLGISVAVRKQEHVFIDFLTN 90

Query: 101 KLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASEQMAITTPAL-EIPDGLRAAALPVGA 159
            + +K R +  T   L+V I + + IH  +       +    AL  I +    AALPV A
Sbjct: 91  LMPEKIRKFTNTFVQLLVFICIFLFIHFGI-RTFNGASFPIDALGGISEKWIFAALPVVA 149

Query: 160 ILM 162
           ILM
Sbjct: 150 ILM 152