BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0048.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 315 4e-86 Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu... 102 5e-22 BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 100 2e-21 SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 99 5e-21 PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 99 8e-21 >PA3508 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 277 Score = 315 bits (808), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 158/229 (68%), Positives = 189/229 (82%), Gaps = 2/229 (0%) Query: 1 VPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRD 60 +PRST+FRLLTTLE MGFV RN G +YRLGMAVLRLGFEYLASLELTE+G+PLL+RL D Sbjct: 44 LPRSTIFRLLTTLEAMGFVTRN--GNEYRLGMAVLRLGFEYLASLELTELGQPLLNRLCD 101 Query: 61 EIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRD 120 EI Y CNLVVRDGRSIVYVAK T +S VNVGTRLPAHATVLGR+LL+DL+L ELR+ Sbjct: 102 EIRYPCNLVVRDGRSIVYVAKVSPSTPLSSSVNVGTRLPAHATVLGRILLQDLSLGELRE 161 Query: 121 LYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVVA 180 LYPEE LE FS NTP++V+ELFDMVQ D+QRG+V EGFFE SIST+AAPVRD SG+V+A Sbjct: 162 LYPEEQLEQFSPNTPRSVLELFDMVQGDRQRGFVQGEGFFEASISTVAAPVRDHSGRVIA 221 Query: 181 AMGATIPSPHIDTDQLDLIVAKVRDTAGELSRLLDHAPAKSGKVVNMWR 229 AMGATI + HID ++++ +V++VR +A ELS LLD+ V ++R Sbjct: 222 AMGATIAAGHIDPERIEGLVSRVRSSADELSYLLDYRADGQDNVTPIFR 270 >Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium glutamicum Length = 255 Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 116/210 (55%), Gaps = 3/210 (1%) Query: 3 RSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRDEI 62 R+T R L TL +G+ ND ++L VL LG YL++L L I +P L+ L ++ Sbjct: 42 RATARRFLHTLTDLGYAVNNDS--RFQLTPRVLELGASYLSALSLPAIAQPRLEVLSRQV 99 Query: 63 GYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRDLY 122 G S ++ V DG I+YV + + ++ +GTR PA+AT +GR++L +L EL ++ Sbjct: 100 GESSSMSVLDGTDIIYVCRVPVRRIMTVNITIGTRFPAYATSMGRIMLANLPEEELDEML 159 Query: 123 PEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVVAAM 182 E ++ + ++ + + + ++RG+ L + E + ++AAP+ + G+VVA++ Sbjct: 160 AAAPPEQLTTRSLTSIASIREEIIATRERGWSLVDQELEPGLRSLAAPITNAQGEVVASI 219 Query: 183 G-ATIPSPHIDTDQLDLIVAKVRDTAGELS 211 +T + H D L++ ++ +TA +S Sbjct: 220 NVSTQSASHSVEDIRKLVLPQLLETAQAIS 249 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 2/194 (1%) Query: 3 RSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRDEI 62 R+T R L TL +G+ E + G+ + L +LRLG YL+ L I +P LDRL + Sbjct: 40 RATARRCLLTLAELGYAEYD--GKFFMLLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSV 97 Query: 63 GYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRDLY 122 G S + V DG IVY+A++ + ++ G+RLPA+ +GRVLL L +E R + Sbjct: 98 GESASASVLDGAEIVYIARASQMRVISINLMAGSRLPAYCASMGRVLLAWLDESEARTIL 157 Query: 123 PEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVVAAM 182 + L + T K +L + ++ + +G+ + + E + +IA PV + G VVAA+ Sbjct: 158 EQTELRARTPFTQKDPEKLMEELRRIRAQGFAVNDQELELGLRSIAVPVFNHRGAVVAAL 217 Query: 183 GATIPSPHIDTDQL 196 P H++ L Sbjct: 218 NIGAPVAHVEVSDL 231 >SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 251 Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 8/197 (4%) Query: 3 RSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRDEI 62 R+TV R L TL ++G+ + + G+ + L LRLG YL++ L I +P LD+L ++ Sbjct: 40 RATVRRSLLTLSQLGYADYD--GKFFTLTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKA 97 Query: 63 GYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRDLY 122 G S + V DG IVYVA++ + + ++ G+RLPA+ +GRVLL L AE R++ Sbjct: 98 GQSASASVLDGTEIVYVARASQRRVMSINLTPGSRLPAYCASMGRVLLAALPEAEAREIL 157 Query: 123 PEEHLEVFSSNTPKTVV---ELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVV 179 L+ +NTP T EL ++ + GY + + E + +IA PV + G+V+ Sbjct: 158 GRSELK---ANTPLTRTDPEELLTELRRVRDEGYAIIDQELELGLCSIAVPVANDRGQVL 214 Query: 180 AAMGATIPSPHIDTDQL 196 AA+ + H+ ++ Sbjct: 215 AALNIGASAAHVPAREM 231 >PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 279 Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 3/183 (1%) Query: 1 VPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRD 60 +PR+ V R L TL ++G+ + GR Y L VL LG YL+S L +P+LDRL + Sbjct: 64 IPRAAVRRCLHTLMQLGYATTD--GRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSE 121 Query: 61 EIGYSCNLVVRDGRSIVYVAKSVT-QTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELR 119 ++ +C++ +G ++Y+A+S T Q + +NVG+RLPA+ T +GR+LL L L Sbjct: 122 QLHEACSMATLEGDDVLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALH 181 Query: 120 DLYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVV 179 + ++ +S T T L + +++G+ + + E + ++A PVRD +G V+ Sbjct: 182 AYFGGVEMQAKTSRTLYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVL 241 Query: 180 AAM 182 AA+ Sbjct: 242 AAL 244