BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0041.p         (339 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3513 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...   407   e-113
mlr6799 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...    72   2e-12
PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...    69   2e-11

>PA3513 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Pae Pseudomonas
           aeruginosa
          Length = 335

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 262/330 (79%), Gaps = 7/330 (2%)

Query: 10  SKLVLSAAVATTLAVTVAAALVPGIAHAAPEEVTYLLPAPPNSPAFAPWVLAQHKGYYAD 69
           SK +L+AA+   L    AA L      AAP EVTYLLPAPPNSPAFAPWV+A+ KGYYAD
Sbjct: 2   SKSLLNAALCGAL---FAAGLT---VQAAPREVTYLLPAPPNSPAFAPWVIAREKGYYAD 55

Query: 70  ENLKINFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRANGIPVKAIAVLGAGSITMVA 129
             LK+ F+  KGGVDVAKQIGAGNA +GGAIGDTPIVVRANGIPVKA+AVLGAG +TM+A
Sbjct: 56  LGLKVTFVAGKGGVDVAKQIGAGNAPVGGAIGDTPIVVRANGIPVKAVAVLGAGGVTMIA 115

Query: 130 ANAGENIKSLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGLSKTDLQIQAAGPAGVWQVFT 189
            +    I S+KDLKGKT+TVMSY+DTTYYA L S++ AGL K+D+ IQAAGP+GVWQ+F+
Sbjct: 116 TDGTAGIDSVKDLKGKTLTVMSYSDTTYYALLASMRKAGLGKSDVDIQAAGPSGVWQLFS 175

Query: 190 AGKASAFAGVPDWVVNSTDAGAKVELLDNGG-FKSMAQAILASDDTIKNKPELLKRLVRA 248
           AG++ A AGVPDWVV++ DAG +V+LL     F+SMAQAILASD+ I+ +PE++  +VRA
Sbjct: 176 AGRSQAMAGVPDWVVSAEDAGRQVKLLPGSEVFESMAQAILASDEAIEKQPEVVGGVVRA 235

Query: 249 TLRGMQDIMKDPKAAATDYVAALPAYKGKEASIEATFEMYRKYVYAGQKTLGQIDAARMD 308
           TL GM+DI+ DP+ AA  + AA+PAYKG+EAS+E    +Y ++VYA Q+ LG ID  R+D
Sbjct: 236 TLMGMRDIIADPRQAAATFAAAVPAYKGREASLERVLRLYVEHVYANQQPLGHIDPQRLD 295

Query: 309 SVQKFYVSEGIVTKATPVNELFTNQFVGTA 338
            V++FYVSEGIV + TP++EL+TN+FV +A
Sbjct: 296 KVRRFYVSEGIVGRETPLDELYTNRFVESA 325


>mlr6799 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Mlo Mesorhizobium loti
          Length = 336

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 18/294 (6%)

Query: 56  APWVLAQHKGYYADENLKINFIV-AKGGVDVAKQIGAGNAVIGGAIGDTPI--VVRANGI 112
           A + + + KG++A  ++ +  I    G  D  + +G  NA  G   GD P   V R+  +
Sbjct: 44  AMFFVGKEKGFFAKNDIDVAEIRKGSGSPDAMRLVGNENADFG--FGDLPTLAVARSQNV 101

Query: 113 PVKAIAVLGAGS-ITMVAANAGENIKSLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGLSK 171
           PV A+A +   S + +++      +    DLKG T+ +     +TY  F G L   GL++
Sbjct: 102 PVVALAAVNQHSPLGIISLAKTLKLAKPSDLKGLTIGIHP-AGSTYIFFKGFLAANGLTE 160

Query: 172 TDLQIQAAGPAGVWQVFTAGKASAFAGVPDWVVNSTDAGA------KVELLDNGGFKSMA 225
            D+ + +  P         G+     G  D  V   +A A       + +  + G+K+  
Sbjct: 161 KDMTLNSVSPP-YESYLLLGRVQTVVGYVDAEVPELEAKAGGPGSLSIMMGSDHGWKAYG 219

Query: 226 QAILASDDTIKNKPELLKRLVRATLRGMQDIMKDPKAAATDYVAALPAYKGKE----ASI 281
             +  S   IK+KPE++ R V+A       ++  P+ AA     A P Y  K+    A I
Sbjct: 220 SGLFTSQKMIKDKPEIVARFVKAYREAFDYVVAHPEEAAEITAKAAPGYADKKDVLLAQI 279

Query: 282 EATFEMYRKYVYAGQKTLGQIDAARMDSVQKFYVSEGIVTKATPVNELFTNQFV 335
            A            +  LG +   + +   K    +G++  A   +++FT++F+
Sbjct: 280 NADIASTFTSPDTKEHGLGWMTKTQWEETLKTLTDQGVLKAALSADDVFTDKFL 333


>PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Pae Pseudomonas
           aeruginosa
          Length = 333

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 11/217 (5%)

Query: 55  FAPWVLAQHKGYYADENL-----KINFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRA 109
           +AP  LA  K  + +++L     ++ ++ ++G     + + AG+       G   ++ RA
Sbjct: 39  YAPTSLALRKFGWLEKSLDGSGTRVRWVFSQGSNRSLEYLNAGSVDFASTAGLAAVLARA 98

Query: 110 NGIPVKAIAVLGAGSITMVAANAGENIKSLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGL 169
           NG PV+ + V      T +       I+SL +LKG+ V     TD  Y   L SL + GL
Sbjct: 99  NGSPVRTVYVASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTD-PYLFLLRSLHSVGL 157

Query: 170 SKTDLQI-QAAGPAGVWQVFTAGKASAFAGV-PDWVVNSTDAGAKVELLDNGGFKSMAQA 227
            K DL+I     P G       G+  A+AG+ P    +   AG+++ L  N GF S    
Sbjct: 158 DKNDLRIVHLQHPDGR-VALEKGQVDAWAGLDPHMAASELQAGSRL-LYRNLGFNSYG-V 214

Query: 228 ILASDDTIKNKPELLKRLVRATLRGMQDIMKDPKAAA 264
           +   +D  +  P+L+++++ A  +    ++  P  AA
Sbjct: 215 LNVREDFAERHPQLIRQVLAAYEQARHWVIGHPDEAA 251