BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0007.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4108 [T] COG2206 HD-GYP domain Pae Pseudomonas aeruginosa            75   3e-14
RSc2515 [T] COG2206 HD-GYP domain Rso Ralstonia solanacearum           69   2e-12

>PA4108 [T] COG2206 HD-GYP domain Pae Pseudomonas aeruginosa
          Length = 414

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 53/83 (63%)

Query: 1   VGIFPTGSCVVMQSGKVGIVIDQHPGSLLTPKVKVFFSALTMAPLPIEIIDLATTRSGDK 60
           VGI+P G+ V ++SG++G+V++QH  SLLTP+VKVFFSA +  P+P +++DL      D+
Sbjct: 318 VGIYPVGALVRLESGRLGVVLEQHGRSLLTPRVKVFFSARSKVPIPQQVVDLGRAGQTDR 377

Query: 61  IASHVDPAKLHLPNLETIWASAA 83
           I         +  NL+ +W   A
Sbjct: 378 IVGFEPAEAWNFRNLDEMWTGLA 400


>RSc2515 [T] COG2206 HD-GYP domain Rso Ralstonia solanacearum
          Length = 402

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1   VGIFPTGSCVVMQSGKVGIVIDQHPGSLLTPKVKVFFSALTMAPLPIEIIDLATTRSGDK 60
           VGI+PTGS V ++SG++ +V++   G+LL+P VKVFFS  +   +  E+IDLA T  GD+
Sbjct: 322 VGIYPTGSLVRLRSGRLAVVMEHASGALLSPTVKVFFSISSGTRITPEVIDLAQT--GDQ 379

Query: 61  IASHVDPAKLHLPNLETIW 79
           I S  +P    L +L  +W
Sbjct: 380 IVSREEPGDWGLTDLHELW 398