BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0004.p         (227 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ygaJ [E] COG3340 Peptidase E Bsu Bacillus subtilis                 231   8e-61
BH0697 [E] COG3340 Peptidase E Bha Bacillus halodurans                220   2e-57

>BS_ygaJ [E] COG3340 Peptidase E Bsu Bacillus subtilis
          Length = 251

 Score =  231 bits (590), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 112/214 (52%), Positives = 149/214 (69%), Gaps = 3/214 (1%)

Query: 1   MKQQIITLGGGGFSTESDP-SLDEYILKQARTAHPRIGFVPTASGDAPAYLLKFYARFAA 59
           M +QII + GGGFS E D  SLD+YIL Q++    RI F+PTASGD+  Y+ +FY  F  
Sbjct: 1   MMKQIIAMAGGGFSMEPDNLSLDQYILNQSKREQHRICFLPTASGDSQNYIQRFYHAFQT 60

Query: 60  LDCMPTHLPFFDR-TPDLREWAMAQDVIFVGGGNTKSMLAVWRAWGFPAILKEALQSGTV 118
           LDC+P+HL  F   + DL  + M  DVI+VGGGNT+++L +W+ WG   IL+EA ++G V
Sbjct: 61  LDCVPSHLSLFKPPSSDLVSFVMEMDVIYVGGGNTRNLLVLWKEWGLDHILREAWKNGVV 120

Query: 119 LAGVSAGAMCWFEHGVTDSNAGVLAPLDGLGFLRGTCCPHYSHEPERRPAFEAFVREEKL 178
           +AG+SAGA+CWFE GVTDS AG L  L  LGFL+G+ CPHY  E +RRPA+   +  + L
Sbjct: 121 VAGISAGAICWFEEGVTDS-AGPLTSLKSLGFLQGSFCPHYDGEKDRRPAYHQLISNKFL 179

Query: 179 PAGVAVDDGAALHFIDGKPVRVVAGRAGAGAYLV 212
            +G A DDGAALHFI+ +  + V+ R+GA AY V
Sbjct: 180 CSGYAADDGAALHFINDQLFQTVSSRSGAKAYRV 213


>BH0697 [E] COG3340 Peptidase E Bha Bacillus halodurans
          Length = 232

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/220 (46%), Positives = 146/220 (66%), Gaps = 2/220 (0%)

Query: 3   QQIITLGGGGFSTE-SDPSLDEYILKQARTAHPRIGFVPTASGDAPAYLLKFYARFAALD 61
           +QII LGGGGFS E  +P LD YIL Q   A+P+I F+PTASGD+  Y+ KFY  F   D
Sbjct: 2   KQIIALGGGGFSMEPENPLLDTYILDQCTKANPKICFIPTASGDSEHYITKFYDFFGKQD 61

Query: 62  CMPTHLPFFDR-TPDLREWAMAQDVIFVGGGNTKSMLAVWRAWGFPAILKEALQSGTVLA 120
           C P+HL  F   T DL  + + +++++VGGGNTK++L +W+ WG  +IL++A + G +LA
Sbjct: 62  CQPSHLSLFRPPTRDLESYLLDKEILYVGGGNTKNLLILWKEWGLDSILRKAWKEGILLA 121

Query: 121 GVSAGAMCWFEHGVTDSNAGVLAPLDGLGFLRGTCCPHYSHEPERRPAFEAFVREEKLPA 180
           G+SAG++CWFE GVTDS    L P+  LGFL+G+ CPHY  E ERRP++   V   ++  
Sbjct: 122 GISAGSICWFEEGVTDSYGDGLEPIKCLGFLKGSHCPHYDGETERRPSYHRLVTSNEIQG 181

Query: 181 GVAVDDGAALHFIDGKPVRVVAGRAGAGAYLVSKQGSVML 220
           G+A DDG A+H+I     ++V+ R  A AY + +    M+
Sbjct: 182 GIAADDGVAIHYIGEDIHKIVSSRPRAKAYRLQQFDHKMI 221