BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0001.p (273 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO0518 [L] COG0417 DNA polymerase elongation subunit (family B)... 317 2e-86 PA1886 Non COG 311 8e-85 STM0097 [L] COG0417 DNA polymerase elongation subunit (family B)... 290 3e-78 polB [L] COG0417 DNA polymerase elongation subunit (family B) Ec... 290 3e-78 ZpolB [L] COG0417 DNA polymerase elongation subunit (family B) E... 288 8e-78 >YPO0518 [L] COG0417 DNA polymerase elongation subunit (family B) Ype Yersinia pestis Length = 789 Score = 317 bits (811), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 152/189 (80%), Positives = 167/189 (88%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 LLSFLLER++VTGL ADR+GGSVAAF HLY+P MHR+G+VAPNLG+ P E SPGGFVMDS Sbjct: 353 LLSFLLERSTVTGLAADRSGGSVAAFTHLYLPRMHRIGYVAPNLGELPEEHSPGGFVMDS 412 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 Q GL+DSVLVLDYKSLYPSIIRTFLIDPVGL+ G+ P SVPGFRGA FSR KH LP Sbjct: 413 QPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVAGMQQPDIQHSVPGFRGAWFSREKHCLP 472 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 AIV +IWQGRE AKRQQNKPLSQALKIIMN+ YGVLGS+GCRFFD RLASSIT+RGHEIM Sbjct: 473 AIVNQIWQGREAAKRQQNKPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHEIM 532 Query: 181 HRTRELIEA 189 +TRELIEA Sbjct: 533 RQTRELIEA 541 >PA1886 Non COG Length = 787 Score = 311 bits (798), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 150/193 (77%), Positives = 168/193 (87%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 LL FLLERA+VTGLPADR+GGSVAAF HLYMP MHR GFVAPNLG+ E SPGGFVMDS Sbjct: 350 LLDFLLERATVTGLPADRSGGSVAAFTHLYMPLMHRAGFVAPNLGEKRPEASPGGFVMDS 409 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 + GL++SVLVLDYKSLYPSIIRTFLIDPVGL+EGL P D SV GFRGARFSR++H LP Sbjct: 410 RPGLYESVLVLDYKSLYPSIIRTFLIDPVGLVEGLRQPDDEHSVEGFRGARFSRTRHCLP 469 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 AIV ++W+GRE AKR++N+PLSQALKIIMN+ YGVLGS+GCRFFD RLASSIT+RGH IM Sbjct: 470 AIVARVWEGREAAKRERNQPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHRIM 529 Query: 181 HRTRELIEAXAPT 193 RTRELIEA T Sbjct: 530 RRTRELIEAEGYT 542 >STM0097 [L] COG0417 DNA polymerase elongation subunit (family B) Sty Salmonella typhimurium LT2 Length = 783 Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 138/189 (73%), Positives = 155/189 (82%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 ++ FLLERA++ GLP DR+GGSVAAFGHLY P MHR G+VAPNLG+ P SPGG+VMDS Sbjct: 348 IMPFLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPLASPGGYVMDS 407 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 Q GL+DSVLVLDYKSLYPSIIRTFLIDPVGL+EG+A P S GF A FSR KH LP Sbjct: 408 QPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLP 467 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 IV +IW GR+ AKRQ NKPLSQALKIIMN+ YGVLG+T CRFFD RLASSITMRGH IM Sbjct: 468 EIVSQIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHAIM 527 Query: 181 HRTRELIEA 189 +T+ LIEA Sbjct: 528 RQTKALIEA 536 >polB [L] COG0417 DNA polymerase elongation subunit (family B) Eco Escherichia coli K12 Length = 783 Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 138/189 (73%), Positives = 155/189 (82%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 ++ FLLERA+V GLP DR+GGSVAAFGHLY P MHR G+VAPNLG+ P SPGG+VMDS Sbjct: 348 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDS 407 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 + GL+DSVLVLDYKSLYPSIIRTFLIDPVGL+EG+A P S GF A FSR KH LP Sbjct: 408 RPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLP 467 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 IV IW GR+ AKRQ NKPLSQALKIIMN+ YGVLG+T CRFFD RLASSITMRGH+IM Sbjct: 468 EIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIM 527 Query: 181 HRTRELIEA 189 +T+ LIEA Sbjct: 528 RQTKALIEA 536 >ZpolB [L] COG0417 DNA polymerase elongation subunit (family B) EcZ Escherichia coli O157:H7 EDL933 Length = 783 Score = 288 bits (737), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 137/189 (72%), Positives = 154/189 (81%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 ++ FLLERA+V GLP DR+GGSVAAFGHLY P MHR G+VAPNLG+ P SPGG+VMDS Sbjct: 348 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDS 407 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 + GL+DSVLVLDYKSLYPSIIRTFLIDPVGL+EG+A P S GF A FSR KH LP Sbjct: 408 RPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLP 467 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 IV IW GR+ AKRQ NKPLSQALKIIMN+ YGVLG+T CRFFD RL SSITMRGH+IM Sbjct: 468 EIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLVSSITMRGHQIM 527 Query: 181 HRTRELIEA 189 +T+ LIEA Sbjct: 528 RQTKALIEA 536