BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0092.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation ... 228 7e-60 PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation o... 224 9e-59 CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation o... 139 4e-33 SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation... 134 2e-31 VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation ... 132 6e-31 >RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Rso Length = 233 Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 102/185 (55%), Positives = 139/185 (75%) Query: 4 GQDQFASNVYYDRTFDCDAAKILPGEYYFTHKDMMIVTVLGSCVSACIRDRVTGIGGMNH 63 Q +++ YYD TF A K+LPGEYY T +D+M+VTVLGSCVSAC+RD++ GIGGMNH Sbjct: 33 AQSAASTHAYYDTTFSRRAMKVLPGEYYVTTEDLMLVTVLGSCVSACVRDKLLGIGGMNH 92 Query: 64 FMLPDSGDGDSPISASMRYGTYAMEILINDVLKAGARRENLEAKVFGGGNVLRGFIAINV 123 FMLP + +S +S SMRYGT+AME+L+N + +AGARRE+LE KVFGG VL G ++V Sbjct: 93 FMLPSRNESESILSPSMRYGTHAMEVLLNQLYRAGARREHLEIKVFGGAAVLAGMSTLDV 152 Query: 124 GERNAQFVRDYLKAENIRVTAEDLNDIWPRKVYFFPRTGKVLVKKLKQLHNNTLVNREQD 183 GERN +FV ++L++E + V A+DL D+ PRKVYF P TG+++V+KL+ + ++ E Sbjct: 153 GERNGKFVLEFLRSEGLPVAAKDLFDVHPRKVYFVPSTGQIMVRKLRSQGSAAELDSEAQ 212 Query: 184 YASKL 188 YASKL Sbjct: 213 YASKL 217 >PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Pae Length = 200 Score = 224 bits (571), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 107/198 (54%), Positives = 142/198 (71%), Gaps = 1/198 (0%) Query: 3 QGQDQFASNVYYDRTFDCDAAKILPGEYYFTHKDMMIVTVLGSCVSACIRDRVTGIGGMN 62 Q ++ N YYD F CDA K+LPGEY+ + +D++IVTVLGSCVS C+RD + GI GMN Sbjct: 4 QAREGAPLNRYYDPYFACDAVKLLPGEYFASGEDLVIVTVLGSCVSVCLRDPLNGIAGMN 63 Query: 63 HFMLPDSGDGDSPISASMRYGTYAMEILINDVLKAGARRENLEAKVFGGGNVLRGFIAIN 122 HFMLP+ G G P S S RYG++AME+LIN +L GA RE L+AKVFGGG+VLR I+ Sbjct: 64 HFMLPERGLGGDPASPSARYGSHAMELLINRMLALGASRERLQAKVFGGGSVLRQ-ISAA 122 Query: 123 VGERNAQFVRDYLKAENIRVTAEDLNDIWPRKVYFFPRTGKVLVKKLKQLHNNTLVNREQ 182 +G+RN +F DYL E I + A D+ + +PRK+YFFPR G+VLVK L +L N+T++ RE+ Sbjct: 123 IGQRNVEFTLDYLATERIPLLASDVLEAFPRKIYFFPRNGRVLVKSLVELKNDTVLQRER 182 Query: 183 DYASKLVAKPVGGAVDLF 200 DY ++ GG +DLF Sbjct: 183 DYRRRIDRNADGGPIDLF 200 >CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Ccr Length = 187 Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 106/174 (60%), Gaps = 7/174 (4%) Query: 28 GEYYFT-HKDMMIVTVLGSCVSACIRDRVTGIGGMNHFMLPDSGDGDSPISASMRYGTYA 86 GE + T ++++ TVLGSC++ACIRD +G+GGMNHF+LPDSGDG A +RYG YA Sbjct: 20 GESHVTADPNVVMTTVLGSCIAACIRDPQSGVGGMNHFLLPDSGDGRRDGDA-VRYGAYA 78 Query: 87 MEILINDVLKAGARRENLEAKVFGGGNVLRGFIAINVGERNAQFVRDYLKAENIRVTAED 146 ME+LIND+LK GARRE LEAK+FGG + G +VG NA F +L+ E I + + Sbjct: 79 MEVLINDLLKRGARRERLEAKIFGGAKLFDGL--SDVGASNAAFAERFLRDEGIPIVSSS 136 Query: 147 LNDIWPRKVYFFPRTGKVLVKKLKQLHNNTLVNREQDYASKLVAKPVGGAVDLF 200 + R+V F+P +G+V + + + V R VA G VDLF Sbjct: 137 TGGVSARRVEFWPASGRVRQRLVAVDNAPQDVRRPTPPPMPAVAS---GDVDLF 187 >SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Sme Length = 183 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 6/177 (3%) Query: 25 ILPGEYYFTH-KDMMIVTVLGSCVSACIRDRVTGIGGMNHFMLPDSGDGDSPISASMRYG 83 ++ GE+ + D+++ T+LGSCV+AC+RD G+GGMNHF+LP S S + + RYG Sbjct: 12 VIQGEFKVVNDPDIVLSTILGSCVAACMRDPAAGVGGMNHFLLPGSATSPSSGADATRYG 71 Query: 84 TYAMEILINDVLKAGARRENLEAKVFGGGNVLRGFIAINVGERNAQFVRDYLKAENIRVT 143 + ME+LIN +LK GARR+ LEAK+FGG + F NVGE+NA F R +L E IR+ Sbjct: 72 VHLMELLINGLLKQGARRDRLEAKIFGGARTIARF--SNVGEQNAAFARQFLMDEGIRIV 129 Query: 144 AEDLNDIWPRKVYFFPRTGKVLVKKLKQLHNNTLVNREQDYASKLVAKPVGGAVDLF 200 E RK+ ++P +G+ L + + +Q A V KP ++ F Sbjct: 130 GESTGGDHGRKLEYWPSSGRARQYALTGVEAQRALQMDQRPA---VPKPAESPIEFF 183 >VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Vch Length = 233 Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 109/184 (59%), Gaps = 9/184 (4%) Query: 24 KILPGEYYFTHKDMMIVTVLGSCVSACIRDRVTGIGGMNHFMLPDSGDGDSP-------I 76 K++PG Y T +I T LGSCVSAC D +GGMNHF+LP + +S + Sbjct: 51 KVMPGGVYATSDQEIIHTGLGSCVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALL 110 Query: 77 SASMRYGTYAMEILINDVLKAGARRENLEAKVFGGGNVLRGFIAINVGERNAQFVRDYLK 136 S S RYG YAME+LIN +L GA RE L+ K+FGG +++ G+ ++ VGE+N +FV +Y K Sbjct: 111 SDSSRYGCYAMEVLINRLLSMGAERERLKFKLFGGAHLM-GYQSL-VGEKNVEFVLEYAK 168 Query: 137 AENIRVTAEDLNDIWPRKVYFFPRTGKVLVKKLKQLHNNTLVNREQDYASKLVAKPVGGA 196 E + V A+DL PRK+ F P+TG+ VK++ + + E+ Y + + Sbjct: 169 REKLNVVAQDLGGAQPRKLLFDPQTGQAWVKRIGFSSAHAIKQDEELYQHSIDKQIPSDD 228 Query: 197 VDLF 200 V+LF Sbjct: 229 VELF 232