BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0085.p (393 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1914 [NU] COG1377 Flagellar biosynthesis pathway, component F... 346 6e-95 PA1449 [NU] COG1377 Flagellar biosynthesis pathway, component Fl... 329 7e-90 YPO1790 [NU] COG1377 Flagellar biosynthesis pathway, component F... 322 7e-88 RSp1394 [NU] COG1377 Flagellar biosynthesis pathway, component F... 317 4e-86 ECs2590 [NU] COG1377 Flagellar biosynthesis pathway, component F... 316 7e-86 >STM1914 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Sty Salmonella typhimurium LT2 Length = 383 Score = 346 bits (887), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 173/374 (46%), Positives = 253/374 (67%) Query: 1 VAEDSDQERTEQPTSKRIEKAREQGDVPRSREMATCVMLLIGGSTLWMFTGPLVTSLNRL 60 +AE+SD ++TE PT R+EKARE+G +PRSRE+ + ++LL+G +W L L + Sbjct: 1 MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGM 60 Query: 61 MVSTMTFEREMAFDPALLFERMSGHFMEVAIACIPIAFLMTLAAVASPLILGGWLFNGSS 120 + + + F+ M DP L+ ++ +A +P+ + L A+ SP++LGG +F+G S Sbjct: 61 LSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKS 120 Query: 121 LEPKFDRLNPIKGIMNLFSLNSLVELGKGILKSVLVGVIAWYAMRSHLDAVLNLSVEPLK 180 L+PKF +LNP+ GI +FS + EL K +LKS LVG + + + H ++ L E Sbjct: 121 LQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAESPI 180 Query: 181 VASSHMPNLLWTCFIMMVCALIGIAVIDVPYQLWNYTRKLKMSRQEVKQEHKESDGDPLI 240 VA + +L+ C +++V +I + DV +Q++++ +KL+MSRQ+++ E KES+GDP + Sbjct: 181 VAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 240 Query: 241 KGKIRALQRAAARRRMMSAVPTADVVVTNPTHFAVALKYSEGGMSAPQVVAKGTEAVAAN 300 KGKIR +QRAAA+RRMM VP ADV+VTNPTH++VAL+Y E MSAP+VVAKG +A Sbjct: 241 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALR 300 Query: 301 IRKIAAENNVPILEAPPLARALHYHTEIGDEIPESLYTAVAEVLAYIFQLRTYNSNGGVR 360 IR+I AE+ VP LEAPPLARAL+ H EIG +IP LY AVAEVLA+++QL+ + GG R Sbjct: 301 IREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQR 360 Query: 361 PEQPSDLEVPKELD 374 P QP +L VP+ LD Sbjct: 361 PPQPENLPVPEALD 374 >PA1449 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Pae Pseudomonas aeruginosa Length = 378 Score = 329 bits (844), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 166/371 (44%), Positives = 246/371 (66%), Gaps = 2/371 (0%) Query: 4 DSDQERTEQPTSKRIEKAREQGDVPRSREMATCVMLLIGGSTLWMFTGPLVTSLNRLMVS 63 +S Q++TE+PT KR +ARE+G +PRSRE+ T +L+ G L ++ L +L RLM S Sbjct: 5 ESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRS 64 Query: 64 TMTFEREMAFDPALLFERMSGHFMEVAIACIPIAFLMTLAAVASPLILGGWLFNGSSLEP 123 RE A + + + + A PI ++ +AA+ P+ LGGWLF+ +L+P Sbjct: 65 NFELSRETAMNTESMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQP 124 Query: 124 KFDRLNPIKGIMNLFSLNSLVELGKGILKSVLVGVIAWYAMRSHLDAVLNLSVEPLKVAS 183 KF RLNP+ G+ +FS SL+EL K ++K ++V +A + + DA+L L+ +PL+ A Sbjct: 125 KFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQPLEQAI 184 Query: 184 SHMPNLL-WTCFIMMVCALIGIAVIDVPYQLWNYTRKLKMSRQEVKQEHKESDGDPLIKG 242 H ++ W+ F M C+L+ IA +DVPYQ+W+ +KL M++QEV+ E+K+S+G P +K Sbjct: 185 LHSVRVVGWSAF-WMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKS 243 Query: 243 KIRALQRAAARRRMMSAVPTADVVVTNPTHFAVALKYSEGGMSAPQVVAKGTEAVAANIR 302 KIR +QR A+RRMM+AVP ADVV+TNPTHFAVALKY G AP ++AKG + +A IR Sbjct: 244 KIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIR 303 Query: 303 KIAAENNVPILEAPPLARALHYHTEIGDEIPESLYTAVAEVLAYIFQLRTYNSNGGVRPE 362 ++A E+ V ++E+P LARA++Y TE+ EIP LY AVA+VLAY++QL+ Y + G RP Sbjct: 304 EVAQEHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQYQAGKGKRPS 363 Query: 363 QPSDLEVPKEL 373 DL +P +L Sbjct: 364 PLKDLPIPPDL 374 >YPO1790 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Ype Yersinia pestis Length = 386 Score = 322 bits (826), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 159/374 (42%), Positives = 247/374 (66%) Query: 1 VAEDSDQERTEQPTSKRIEKAREQGDVPRSREMATCVMLLIGGSTLWMFTGPLVTSLNRL 60 +AEDSDQE++E+PT+ ++EKARE+G +PRSRE+ + +ML G + LWM + L+ + Sbjct: 1 MAEDSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAM 60 Query: 61 MVSTMTFEREMAFDPALLFERMSGHFMEVAIACIPIAFLMTLAAVASPLILGGWLFNGSS 120 + + F+ M + + ++ + +A +PI + + A+A P++LGG LF+G S Sbjct: 61 VAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGES 120 Query: 121 LEPKFDRLNPIKGIMNLFSLNSLVELGKGILKSVLVGVIAWYAMRSHLDAVLNLSVEPLK 180 ++ R++P+ G+ +FS +L EL K ILK+ LVG + + + ++ L P Sbjct: 121 IKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPV 180 Query: 181 VASSHMPNLLWTCFIMMVCALIGIAVIDVPYQLWNYTRKLKMSRQEVKQEHKESDGDPLI 240 A +L+ C +++V L + DV YQ+ ++ +KL+M++Q+++ E K +GDP + Sbjct: 181 AALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240 Query: 241 KGKIRALQRAAARRRMMSAVPTADVVVTNPTHFAVALKYSEGGMSAPQVVAKGTEAVAAN 300 KG+IR QRA ARRRMM VP ADV+VTNPTH+AVAL+Y+E MSAP+V+AKG AVA Sbjct: 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALR 300 Query: 301 IRKIAAENNVPILEAPPLARALHYHTEIGDEIPESLYTAVAEVLAYIFQLRTYNSNGGVR 360 IR++ AE+ +P+LEAPPLARAL H+E+G IP +LY AVAEVLA+++QL+ + GG+ Sbjct: 301 IRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLI 360 Query: 361 PEQPSDLEVPKELD 374 P++P L VP+ LD Sbjct: 361 PKKPEHLPVPEALD 374 >RSp1394 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Rso Ralstonia solanacearum Length = 387 Score = 317 bits (811), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 159/373 (42%), Positives = 243/373 (65%), Gaps = 1/373 (0%) Query: 1 VAEDSDQERTEQPTSKRIEKAREQGDVPRSREMATCVMLLIGGSTLWMFTGPLVTSLNRL 60 ++EDSD E+TE +++R+E+ARE+GDVP+SRE+ + V+L G LW+ +V + + Sbjct: 1 MSEDSDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLATGALGLWVMGESIVRTASSF 60 Query: 61 MVSTMTFEREMAFDPALLFERMSGHFMEVAIACIPIAFLMTLAAVASPLILGGWLFNGSS 120 + + F R ++ + F +A+ + ++ LAA+ SPL L + Sbjct: 61 LARCLEFHRYDYTRAQEQWQYVGAQFGPLAMVLAGLILMLVLAAL-SPLALTRGAVSFKP 119 Query: 121 LEPKFDRLNPIKGIMNLFSLNSLVELGKGILKSVLVGVIAWYAMRSHLDAVLNLSVEPLK 180 L P RL + G+ +FS+ L+EL + + K VLVG + W+ + + D + L + L Sbjct: 120 LTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPRQDLV 179 Query: 181 VASSHMPNLLWTCFIMMVCALIGIAVIDVPYQLWNYTRKLKMSRQEVKQEHKESDGDPLI 240 ++ F+ M ++ +A +DVP LW Y RK +M+++EV++EH+ES+GDP + Sbjct: 180 AGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEGDPQL 239 Query: 241 KGKIRALQRAAARRRMMSAVPTADVVVTNPTHFAVALKYSEGGMSAPQVVAKGTEAVAAN 300 KG+IRA+QR AA+RRMM+ VP ADV+VTNPTH+AVAL+YSE AP+V+AKG + VAA Sbjct: 240 KGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADMVAAK 299 Query: 301 IRKIAAENNVPILEAPPLARALHYHTEIGDEIPESLYTAVAEVLAYIFQLRTYNSNGGVR 360 IR++ AE+ +P+LEAPPLARAL+ HTEIG +IP +LY AVAEVLAY++QLR ++GG Sbjct: 300 IRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLRRVRTHGGRA 359 Query: 361 PEQPSDLEVPKEL 373 P +P+DL VP ++ Sbjct: 360 PVRPTDLPVPADM 372 >ECs2590 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Ecs Escherichia coli O157:H7 Length = 382 Score = 316 bits (809), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 171/371 (46%), Positives = 252/371 (67%) Query: 4 DSDQERTEQPTSKRIEKAREQGDVPRSREMATCVMLLIGGSTLWMFTGPLVTSLNRLMVS 63 D ++TE PT R+EKARE+G +PRSRE+ + ++LL+G S +W L L+ ++ + Sbjct: 3 DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSA 62 Query: 64 TMTFEREMAFDPALLFERMSGHFMEVAIACIPIAFLMTLAAVASPLILGGWLFNGSSLEP 123 + F+ + DP L+ ++ E +A +P+ + L A+ SP++LGG +F+G SL+P Sbjct: 63 GLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQP 122 Query: 124 KFDRLNPIKGIMNLFSLNSLVELGKGILKSVLVGVIAWYAMRSHLDAVLNLSVEPLKVAS 183 KF +LNP+ GI +FS + EL K ILK++LVG + + + H ++ L E A Sbjct: 123 KFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAESPITAM 182 Query: 184 SHMPNLLWTCFIMMVCALIGIAVIDVPYQLWNYTRKLKMSRQEVKQEHKESDGDPLIKGK 243 + +L+ C +++V +I + DV +Q++++ +KL+MSRQ+++ E K+S+GDP +KG+ Sbjct: 183 GNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGR 242 Query: 244 IRALQRAAARRRMMSAVPTADVVVTNPTHFAVALKYSEGGMSAPQVVAKGTEAVAANIRK 303 IR +QRAAARRRMM+ VP ADV+V NPTH++VAL+Y E MSAP+VVAKG VA IR+ Sbjct: 243 IRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIRE 302 Query: 304 IAAENNVPILEAPPLARALHYHTEIGDEIPESLYTAVAEVLAYIFQLRTYNSNGGVRPEQ 363 I AENNVP LEAPPLARAL+ H EIG +IP LY AVAEVLA+++QL+ + GG RP Q Sbjct: 303 IGAENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRPVQ 362 Query: 364 PSDLEVPKELD 374 P+ L VP+ LD Sbjct: 363 PTHLPVPEALD 373