BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0076.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0341 [NO] COG1261 Flagellar basal body P-ring biosynthesis pr... 125 1e-28 STM1173 [NO] COG1261 Flagellar basal body P-ring biosynthesis pr... 89 6e-18 YPO1798 [NO] COG1261 Flagellar basal body P-ring biosynthesis pr... 88 2e-17 ZflgA [NO] COG1261 Flagellar basal body P-ring biosynthesis prot... 79 8e-15 ECs1450 [NO] COG1261 Flagellar basal body P-ring biosynthesis pr... 79 8e-15 >RSp0341 [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Rso Ralstonia solanacearum Length = 295 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 105/189 (55%) Query: 52 TTGLSGAVNIAVEPADSRLNLAACTSPQAFMPNGGRLWGRTTIGVKCIAPSPWTIYLRAT 111 T G ++ V D R+ C + +P RL GR +GV+C +P W ++ AT Sbjct: 107 TDGGGSRASVDVGAVDPRVANQPCDQVELMLPPANRLRGRIQVGVRCRSPHAWAAWVPAT 166 Query: 112 VQVIAEYIVTAAPLAQGQIIGPNDITKVKGDLSNLPNGIITDSSQAIGRTANISLALGAP 171 +Q+ Y V A L G+ + D+ GDLS LP +I + A+GR SLA P Sbjct: 167 IQISGTYYVAARQLPPGKTLDMGDLEARTGDLSALPPSVILQPADAVGRVLLTSLAPNQP 226 Query: 172 IRQDALRSNRVVQQGQAVRVVSTGPGFQITTEARALTNGSEGQMVQAKTSAGQVVSGIAK 231 +R ++LR VQ GQ V++V+ G GFQ+T++ RAL + GQ+ Q +T+ G V+SGIA+ Sbjct: 227 LRAESLRMPIAVQAGQTVKLVADGGGFQVTSDGRALNQAAVGQVAQVRTANGNVISGIAQ 286 Query: 232 AGGILEINY 240 + G++ + + Sbjct: 287 SAGVVAVQF 295 >STM1173 [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Sty Salmonella typhimurium LT2 Length = 219 Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 3/168 (1%) Query: 72 LAACTSPQAFMPNGGRLWGRTTIGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLAQGQII 131 L +C P M +LWG + +C YL+ VQ Y+ AAP+A+G + Sbjct: 54 LPSCEQPAFSMTGSAKLWGNVNVVARCANEKR---YLQVNVQATGNYVAVAAPIARGGKL 110 Query: 132 GPNDITKVKGDLSNLPNGIITDSSQAIGRTANISLALGAPIRQDALRSNRVVQQGQAVRV 191 P ++T +G L LP + D Q + LA G P++ +R V+ GQ V+V Sbjct: 111 TPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTMIRQAWRVKAGQRVQV 170 Query: 192 VSTGPGFQITTEARALTNGSEGQMVQAKTSAGQVVSGIAKAGGILEIN 239 ++ G GF + E +A+ N + Q + + ++GQ+VSG + G + IN Sbjct: 171 IANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVDSDGNILIN 218 >YPO1798 [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Ype Yersinia pestis Length = 232 Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 75 CTSPQAFMPNGGRLWGRTTIGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLAQGQIIGPN 134 C +P+ +P R WG ++ V+C +++ VQV Y V LA G+ I Sbjct: 70 CDAPEITLPANARPWGNISLSVRC---DGLRRFIQTQVQVSGRYAVAVRRLAAGEKISAQ 126 Query: 135 DITKVKGDLSNLPNGIITDSSQAIGRTANISLALGAPIRQDALRSNRVVQQGQAVRVVST 194 DI +G L LP G + D+ A G + + G P+ ++ LR +V+ GQ V V++ Sbjct: 127 DIQMKQGRLDTLPPGALLDAHFAQGAVSQRQINAGQPLTRNMLRRLWLVKAGQDVPVLAQ 186 Query: 195 GPGFQITTEARALTNGSEGQMVQAKTSAGQVVSGIAKAGGILEI 238 G GF + + +A+ NG+ + ++ + +GQ+VSG G + I Sbjct: 187 GDGFNVNSNGKAMNNGAAQETIRVRMPSGQIVSGTVADDGTIRI 230 >ZflgA [NO] COG1261 Flagellar basal body P-ring biosynthesis protein EcZ Escherichia coli O157:H7 EDL933 Length = 219 Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 5/195 (2%) Query: 45 EQFMKVQTTGLSGAVNIAVEPADSRLNLAACTSPQAFMPNGGRLWGRTTIGVKCIAPSPW 104 + F Q G+S V +++ A + L C P M N RLWG + +C Sbjct: 29 QTFFSSQLAGISDEVRVSIRTAPNL--LPPCEQPLLSMSNNSRLWGNVNVLARCGNDKR- 85 Query: 105 TIYLRATVQVIAEYIVTAAPLAQGQIIGPNDITKVKGDLSNLPNGIITDSSQAIGRTANI 164 YL+ VQ Y+V A P+ +G +G ++ +G L LP + D +Q + + Sbjct: 86 --YLQVNVQATGNYVVAAMPIVRGGKLGAGNVKLKRGRLDTLPPRTVLDINQLVDAVSLR 143 Query: 165 SLALGAPIRQDALRSNRVVQQGQAVRVVSTGPGFQITTEARALTNGSEGQMVQAKTSAGQ 224 L+ PI+ R V+ GQ V V+++G GF E +AL N + Q + + +GQ Sbjct: 144 DLSPDQPIQLTQFRQAWRVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGQ 203 Query: 225 VVSGIAKAGGILEIN 239 VVSG+ A G + IN Sbjct: 204 VVSGVVDADGNILIN 218 >ECs1450 [NO] COG1261 Flagellar basal body P-ring biosynthesis protein Ecs Escherichia coli O157:H7 Length = 219 Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 5/195 (2%) Query: 45 EQFMKVQTTGLSGAVNIAVEPADSRLNLAACTSPQAFMPNGGRLWGRTTIGVKCIAPSPW 104 + F Q G+S V +++ A + L C P M N RLWG + +C Sbjct: 29 QTFFSSQLAGISDEVRVSIRTAPNL--LPPCEQPLLSMSNNSRLWGNVNVLARCGNDKR- 85 Query: 105 TIYLRATVQVIAEYIVTAAPLAQGQIIGPNDITKVKGDLSNLPNGIITDSSQAIGRTANI 164 YL+ VQ Y+V A P+ +G +G ++ +G L LP + D +Q + + Sbjct: 86 --YLQVNVQATGNYVVAAMPIVRGGKLGAGNVKLKRGRLDTLPPRTVLDINQLVDAVSLR 143 Query: 165 SLALGAPIRQDALRSNRVVQQGQAVRVVSTGPGFQITTEARALTNGSEGQMVQAKTSAGQ 224 L+ PI+ R V+ GQ V V+++G GF E +AL N + Q + + +GQ Sbjct: 144 DLSPDQPIQLTQFRQAWRVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGQ 203 Query: 225 VVSGIAKAGGILEIN 239 VVSG+ A G + IN Sbjct: 204 VVSGVVDADGNILIN 218