BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0075.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1174 [N] COG1815 Flagellar basal body protein Sty Salmonella ...   138   3e-33
ZflgB [N] COG1815 Flagellar basal body protein EcZ Escherichia c...   133   1e-31
ECs1451 [N] COG1815 Flagellar basal body protein Ecs Escherichia...   133   1e-31
flgB [N] COG1815 Flagellar basal body protein Eco Escherichia co...   132   2e-31
RSp0342 [N] COG1815 Flagellar basal body protein Rso Ralstonia s...   126   1e-29

>STM1174 [N] COG1815 Flagellar basal body protein Sty Salmonella typhimurium
           LT2
          Length = 138

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 92/140 (65%), Gaps = 3/140 (2%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMAGKSSTV 60
           M  +LD  LRF + ALNLRAQRQ++LA+NIANADTP Y+ARDIDFA  L+  M       
Sbjct: 1   MLDRLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFASELKKVMVRGREET 60

Query: 61  PPVELARTSSAHISGKATGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVRYE 120
             V L  TSS HI  +A     +    LLYR   Q S+DGNTVDMD ER QF DN+++Y+
Sbjct: 61  GGVALTLTSSHHIPAQAVSSPAVD---LLYRVPDQPSLDGNTVDMDRERTQFADNSLKYQ 117

Query: 121 AGITAVNAQIKGLLAAIQPG 140
            G+T + +Q+KG++  +Q G
Sbjct: 118 MGLTVLGSQLKGMMNVLQGG 137


>ZflgB [N] COG1815 Flagellar basal body protein EcZ Escherichia coli
           O157:H7 EDL933
          Length = 138

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 3/140 (2%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMAGKSSTV 60
           M  KLD  LRF + ALNLRAQRQ++LA+NIANADTP Y+ARDIDFA  L+  M    +  
Sbjct: 1   MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDIDFASELKKVMQRGRNAT 60

Query: 61  PPVELARTSSAHISGKATGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVRYE 120
             V L  TS+ HI  +A        + L YR   Q S+DGNTVDMD ER QF DN+++Y+
Sbjct: 61  SVVALTMTSTQHIPAQALTP---PTAELQYRIPDQPSLDGNTVDMDRERTQFADNSLQYQ 117

Query: 121 AGITAVNAQIKGLLAAIQPG 140
             ++A++ QIKG++  +Q G
Sbjct: 118 MSLSALSGQIKGMMNVLQSG 137


>ECs1451 [N] COG1815 Flagellar basal body protein Ecs Escherichia coli
           O157:H7
          Length = 138

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 3/140 (2%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMAGKSSTV 60
           M  KLD  LRF + ALNLRAQRQ++LA+NIANADTP Y+ARDIDFA  L+  M    +  
Sbjct: 1   MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDIDFASELKKVMQRGRNAT 60

Query: 61  PPVELARTSSAHISGKATGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVRYE 120
             V L  TS+ HI  +A        + L YR   Q S+DGNTVDMD ER QF DN+++Y+
Sbjct: 61  SVVALTMTSTQHIPAQALTP---PTAELQYRIPDQPSLDGNTVDMDRERTQFADNSLQYQ 117

Query: 121 AGITAVNAQIKGLLAAIQPG 140
             ++A++ QIKG++  +Q G
Sbjct: 118 MSLSALSGQIKGMMNVLQSG 137


>flgB [N] COG1815 Flagellar basal body protein Eco Escherichia coli K12
          Length = 138

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 91/140 (65%), Gaps = 3/140 (2%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMAGKSSTV 60
           M  KLD  LRF + ALNLRAQRQ++LA+NIANADTP Y+ARDIDFA  L+  M       
Sbjct: 1   MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDIDFASELKKVMQRGRDAT 60

Query: 61  PPVELARTSSAHISGKATGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVRYE 120
             V L  TS+ HI  +A        + L YR   Q S+DGNTVDMD ER QF DN+++Y+
Sbjct: 61  SVVALTMTSTQHIPAQALTP---PTAELQYRIPDQPSLDGNTVDMDRERTQFADNSLQYQ 117

Query: 121 AGITAVNAQIKGLLAAIQPG 140
             ++A++ QIKG++  +Q G
Sbjct: 118 MSLSALSGQIKGMMNVLQSG 137


>RSp0342 [N] COG1815 Flagellar basal body protein Rso Ralstonia solanacearum
          Length = 165

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 88/153 (57%), Gaps = 17/153 (11%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMAGKSSTV 60
           M  KLD    F E AL LR+QR QLLASNIANADTP+YKARD DF   LQ A   +S   
Sbjct: 13  MVDKLDQLFGFQEQALRLRSQRHQLLASNIANADTPSYKARDFDFQSALQKAAGQQSGNS 72

Query: 61  PPVELARTSSAHISGKATGDGGI-----------GGSPL----LYRKETQSSVDGNTVDM 105
            P  +  T++ H++      G +              PL     YR   Q S+DGNTVDM
Sbjct: 73  LP--MTATAAGHLTAAGAPAGDVVPMQASLSAQSKADPLQGEVQYRTSQQPSIDGNTVDM 130

Query: 106 DVERNQFTDNAVRYEAGITAVNAQIKGLLAAIQ 138
           D ER +F DN VRYEA ++ V A+IK +LAAIQ
Sbjct: 131 DGERMRFADNTVRYEADLSIVTAKIKSMLAAIQ 163