BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0073.p (239 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia ... 169 3e-42 ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherich... 156 5e-38 ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia... 155 5e-38 flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia ... 155 9e-38 STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonell... 147 1e-35 >YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia pestis Length = 225 Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 134/207 (64%), Gaps = 9/207 (4%) Query: 33 IQNRFLKLLTVQMQNQDPTNPMDNSQLTTQLAQLSTVSGISQLNTTLASLMSNLGSAQSL 92 +QNRFL LL Q++NQDPTNPM+N++LTTQLAQ++TVSGI +LNTTL ++ + S+QSL Sbjct: 28 LQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSL 87 Query: 93 QAANMIGHSVLAPGNNLTLTSDTTKAADGTETTTQKAVFGVQLGANADSIKVTIRDATTG 152 A ++IG V+ PG N+ T + DGT +TT FG++L AD + TI D+ G Sbjct: 88 YATSLIGRGVMVPGTNI-----FTGSTDGTVSTTP---FGLELQRPADKVTATISDS-NG 138 Query: 153 AVVRQMDLGSQAAGTVPVIWDGTNDAGTKAADGQYTFTVAATSAGTAVDAAALSFGTVAS 212 VVR +++G AG WDG+ DAG A DG YT + A++ G ++ A L++ V Sbjct: 139 QVVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNG 198 Query: 213 VSTGADGVKLNVSNIGTIKPTDVIQIL 239 V+ GADG KL++ GTI +V QIL Sbjct: 199 VTRGADGSKLDLGLAGTITLDEVRQIL 225 >ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherichia coli O157:H7 Length = 231 Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 128/207 (61%), Gaps = 6/207 (2%) Query: 33 IQNRFLKLLTVQMQNQDPTNPMDNSQLTTQLAQLSTVSGISQLNTTLASLMSNLGSAQSL 92 +Q+ FL LL Q++NQDPTNPM+N++LT+QLAQ+STVSGI +LNTTL S+ + ++QSL Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 93 QAANMIGHSVLAPGNNLTLTSDTTKAADGTETTTQKAVFGVQLGANADSIKVTIRDATTG 152 QA+N+IGH V+ PG T T + +G TTT FGV+L AD + TI D G Sbjct: 91 QASNLIGHGVMIPG---TTVLAGTGSEEGAVTTTTP--FGVELQQAADKVTATITDK-NG 144 Query: 153 AVVRQMDLGSQAAGTVPVIWDGTNDAGTKAADGQYTFTVAATSAGTAVDAAALSFGTVAS 212 AVVR +D+G AG WDGT G+ A +G Y ++A++ GT + A L F V Sbjct: 145 AVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQG 204 Query: 213 VSTGADGVKLNVSNIGTIKPTDVIQIL 239 V G +G L++ GT +V QI+ Sbjct: 205 VIRGNNGNTLDLGTYGTTTLDEVRQII 231 >ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 231 Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 128/207 (61%), Gaps = 6/207 (2%) Query: 33 IQNRFLKLLTVQMQNQDPTNPMDNSQLTTQLAQLSTVSGISQLNTTLASLMSNLGSAQSL 92 +Q+ FL LL Q++NQDPTNPM+N++LT+QLAQ+STVSGI +LNTTL S+ + ++QSL Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 93 QAANMIGHSVLAPGNNLTLTSDTTKAADGTETTTQKAVFGVQLGANADSIKVTIRDATTG 152 QA+N+IGH V+ PG T T + +G TTT FGV+L AD + TI D G Sbjct: 91 QASNLIGHGVMIPG---TTVLAGTGSEEGAVTTTTP--FGVELQQAADKVTATITDK-NG 144 Query: 153 AVVRQMDLGSQAAGTVPVIWDGTNDAGTKAADGQYTFTVAATSAGTAVDAAALSFGTVAS 212 AVVR +D+G AG WDGT G+ A +G Y ++A++ GT + A L F V Sbjct: 145 AVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQG 204 Query: 213 VSTGADGVKLNVSNIGTIKPTDVIQIL 239 V G +G L++ GT +V QI+ Sbjct: 205 VIRGNNGBTLDLGTYGTTTLDEVRQII 231 >flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia coli K12 Length = 231 Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 6/207 (2%) Query: 33 IQNRFLKLLTVQMQNQDPTNPMDNSQLTTQLAQLSTVSGISQLNTTLASLMSNLGSAQSL 92 +Q+ FL LL Q++NQDPTNPM+N++LT+QLAQ+STVSGI +LNTTL S+ + ++QSL Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 93 QAANMIGHSVLAPGNNLTLTSDTTKAADGTETTTQKAVFGVQLGANADSIKVTIRDATTG 152 QA+N+IGH V+ PG T T + +G TTT FGV+L AD + TI D G Sbjct: 91 QASNLIGHGVMIPG---TTVLAGTGSEEGAVTTTTP--FGVELQQAADKVTATITDK-NG 144 Query: 153 AVVRQMDLGSQAAGTVPVIWDGTNDAGTKAADGQYTFTVAATSAGTAVDAAALSFGTVAS 212 AVVR +D+G AG WDGT G+ A +G Y ++A++ GT + A L F V Sbjct: 145 AVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQG 204 Query: 213 VSTGADGVKLNVSNIGTIKPTDVIQIL 239 V G G L++ GT +V QI+ Sbjct: 205 VIRGNSGNTLDLGTYGTTTLDEVRQII 231 >STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonella typhimurium LT2 Length = 232 Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 128/224 (57%), Gaps = 10/224 (4%) Query: 18 STSNTSSLNDNSPEAIQNRFLKLLTVQMQNQDPTNPMDNSQLTTQLAQLSTVSGISQLNT 77 +T+ + S+ ++ +Q+ FL LL Q++NQDPTNP+ N++LTTQLAQ+STVSGI +LNT Sbjct: 17 TTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNT 76 Query: 78 TLASLMSNLGSAQSLQAANMIGHSVLAPGNNLTLTSDTTKAADGTET--TTQKAVFGVQL 135 TL ++ + ++QSLQA +IGH V+ PG T A G E T FGV+L Sbjct: 77 TLGAISGQIDNSQSLQATTLIGHGVMVPGT-------TILAGKGAEEGAVTSTTPFGVEL 129 Query: 136 GANADSIKVTIRDATTGAVVRQMDLGSQAAGTVPVIWDGTNDAGTKAADGQYTFTVAATS 195 AD + TI D G VVR +++G AG WDG GT +G Y + A++ Sbjct: 130 QQPADKVTATITDK-DGRVVRTLEIGELRAGVHTFTWDGKQTDGTTVPNGSYNIAITASN 188 Query: 196 AGTAVDAAALSFGTVASVSTGADGVKLNVSNIGTIKPTDVIQIL 239 GT + A L F V V+ G++G L++ GT +V QI+ Sbjct: 189 GGTQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII 232