BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0060.p         (83 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0374 [NU] COG1987 Flagellar biosynthesis pathway, component F...   100   1e-21
BU083 [NU] COG1987 Flagellar biosynthesis pathway, component Fli...    92   2e-19
YPO1820a [NU] COG1987 Flagellar biosynthesis pathway, component ...    89   2e-18
STM1980 [NU] COG1987 Flagellar biosynthesis pathway, component F...    89   3e-18
BS_fliQ [NU] COG1987 Flagellar biosynthesis pathway, component F...    86   2e-17

>RSp0374 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Rso
          Ralstonia solanacearum
          Length = 89

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 64/83 (77%)

Query: 1  MTLGRQAMEVTLMIAAPMLFTALVIGLIVSIFQAATQINEATLTFIPKLVGVFLALIIAG 60
          + + RQAM+V +MI APML  +L++GL+V++FQAATQ+NE TL+FIPKL+ V   +I+AG
Sbjct: 7  LNMARQAMQVAMMIGAPMLLVSLIVGLLVAVFQAATQLNEQTLSFIPKLLAVAATMILAG 66

Query: 61 PWMLSVMLDYMRLMFTGIPAMVQ 83
          PW+L V++DY R + T IP  V 
Sbjct: 67 PWVLGVIVDYTRDVLTNIPNYVN 89


>BU083 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Buc
          Buchnera sp. APS
          Length = 89

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 57/78 (73%)

Query: 1  MTLGRQAMEVTLMIAAPMLFTALVIGLIVSIFQAATQINEATLTFIPKLVGVFLALIIAG 60
          M L   AM+V L+IA+P+L  AL+ GLI+SI QAATQ+NE TL+FIPK++ V   + I G
Sbjct: 7  MELFYNAMKVALIIASPLLLAALISGLIISILQAATQVNEQTLSFIPKIISVLGVISILG 66

Query: 61 PWMLSVMLDYMRLMFTGI 78
          PWML VMLDYM  +F  I
Sbjct: 67 PWMLGVMLDYMHNLFNNI 84


>YPO1820a [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Ype
          Yersinia pestis
          Length = 89

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 67/82 (81%)

Query: 1  MTLGRQAMEVTLMIAAPMLFTALVIGLIVSIFQAATQINEATLTFIPKLVGVFLALIIAG 60
          M LG +AM++ L +AAP+L  AL+ GLIVS+ QAATQINE TL+FIPK++ VF  ++IAG
Sbjct: 7  MALGTEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFTTMVIAG 66

Query: 61 PWMLSVMLDYMRLMFTGIPAMV 82
          PWML+++LDYMR +FT +P ++
Sbjct: 67 PWMLNLILDYMRNLFTSLPTLI 88


>STM1980 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Sty
          Salmonella typhimurium LT2
          Length = 89

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 69/82 (84%)

Query: 1  MTLGRQAMEVTLMIAAPMLFTALVIGLIVSIFQAATQINEATLTFIPKLVGVFLALIIAG 60
          M +G +AM+V L +AAP+L  AL+ GLI+SI QAATQINE TL+FIPK+V VF+A+I+AG
Sbjct: 7  MMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFIAIIVAG 66

Query: 61 PWMLSVMLDYMRLMFTGIPAMV 82
          PWML+++LDY+R +F+ +P ++
Sbjct: 67 PWMLNLLLDYVRTLFSNLPYII 88


>BS_fliQ [NU] COG1987 Flagellar biosynthesis pathway, component FliQ Bsu
          Bacillus subtilis
          Length = 89

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)

Query: 1  MTLGRQAMEVTLMIAAPMLFTALVIGLIVSIFQAATQINEATLTFIPKLVGVFLALIIAG 60
          +++  +A+ VTLMI+ P+L  AL++GLIVSIFQA TQI E TL FIPK+V V LALI  G
Sbjct: 7  ISMAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLLALIFFG 66

Query: 61 PWMLSVMLDYMRLMFTGI 78
          PWMLS +L +   +F+ +
Sbjct: 67 PWMLSTILSFTTELFSNL 84