BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0045.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic d...    76   2e-14
BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic d...    75   4e-14
BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    70   1e-12
PA1473 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    67   1e-11
CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    66   2e-11

>Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Cje Campylobacter jejuni
          Length = 93

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 1  MNKPKLPFQNAVALAYNTNQ-AAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLM 59
          M+K K   + AVAL Y   + +APKV+A G G  A  II+ A+E GV + E ++L+ +L 
Sbjct: 1  MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILS 60

Query: 60 QVDLDQQIPPALYRAVAELLAWLYRIEN 87
          ++DL  +IPP +Y+AVAE+ A++Y++ N
Sbjct: 61 KLDLGDEIPPNMYKAVAEVFAFIYQMAN 88


>BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Bsu Bacillus subtilis
          Length = 93

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 3  KPKLPFQNAVALAYNTNQ-AAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQV 61
          K + P + AVAL Y+  +  AP+V+A G G VA+ II  A+++GV + E + LV L+  +
Sbjct: 2  KEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRHL 61

Query: 62 DLDQQIPPALYRAVAELLAWLYRIE 86
           +D QIP ALY  VAE+ +++Y+++
Sbjct: 62 TVDDQIPEALYETVAEIFSFIYKLD 86


>BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Bha Bacillus halodurans
          Length = 92

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 9  QNAVALAYN-TNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQVDLDQQI 67
          + AVA+ YN   + AP+++ KG GLVA+ +I RA E+ V + +   LV LL Q+++++ I
Sbjct: 8  RQAVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVELLGQLEINETI 67

Query: 68 PPALYRAVAELLAWLYRIEN 87
          P  LY  VAEL A++Y+I+ 
Sbjct: 68 PEELYEVVAELFAFIYQIDQ 87


>PA1473 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Pae Pseudomonas aeruginosa
          Length = 111

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 1  MNKPKLPF-QNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLM 59
          MN+ + P  + A+AL+Y+  QAAP + AKG   +AEAI+A AR+  V ++E+ ELV LL 
Sbjct: 1  MNRKQSPAPRQAIALSYD-GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLA 59

Query: 60 QVDLDQQIPPALYRAVAELLAWLYRIEN 87
          +++L   IP ALYR +AE++A+ + ++ 
Sbjct: 60 RLELGDAIPEALYRTIAEIIAFAWHLKG 87


>CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Ccr Caulobacter vibrioides
          Length = 87

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 2  NKPKLPFQNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQV 61
          +KP++    AVAL Y    A PKVVA G G + E II  A+E GV + E   L   L  +
Sbjct: 9  SKPRI----AVALLYEEPNA-PKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQALSTI 63

Query: 62 DLDQQIPPALYRAVAELLAWLYR 84
          ++D++IP ALYRAVAE+L++L +
Sbjct: 64 EIDEEIPEALYRAVAEVLSFLLK 86