BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0036.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1307 [J] COG0360 Ribosomal protein S6 Rso Ralstonia solanacearum   195   2e-50
NMA1537 [J] COG0360 Ribosomal protein S6 NmA Neisseria meningiti...   159   1e-39
NMB1323 [J] COG0360 Ribosomal protein S6 Nme Neisseria meningiti...   159   2e-39
VC0366 [J] COG0360 Ribosomal protein S6 Vch Vibrio cholerae           153   9e-38
YPO3539 [J] COG0360 Ribosomal protein S6 Ype Yersinia pestis          149   1e-36

>RSc1307 [J] COG0360 Ribosomal protein S6 Rso Ralstonia solanacearum
          Length = 122

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 101/114 (88%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTARGGKIHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAMIERYK  VT++GG++HRVEDWGRRQLAY IQKLAKAHYV
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMIERYKSTVTSQGGQVHRVEDWGRRQLAYMIQKLAKAHYV 60

Query: 61  CLNIEVDGETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAVKS 114
           C+NIE   ETLAE+E  FKFNDAVLRHL V+ KKAET PSP++K VQ+E+A K+
Sbjct: 61  CVNIECGKETLAELEHAFKFNDAVLRHLIVQTKKAETAPSPMMKEVQREEAKKA 114


>NMA1537 [J] COG0360 Ribosomal protein S6 NmA Neisseria meningitidis Z2491
          Length = 122

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 90/121 (74%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTARGGKIHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAM+ERYK ++    GKIHR+EDWGRRQLAY I K+ KAHYV
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHYV 60

Query: 61  CLNIEVDGETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAVKSNRAEAP 120
            +NIE   E + E+ET F+FNDAVLRHLT+K K A T  SP+L   + ++ +     EA 
Sbjct: 61  LMNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASPMLGGEKAKNLLSGASEEAV 120

Query: 121 A 121
           A
Sbjct: 121 A 121


>NMB1323 [J] COG0360 Ribosomal protein S6 Nme Neisseria meningitidis MC58
          Length = 122

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 90/121 (74%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTARGGKIHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAM+ERYK ++    GKIHR+EDWGRRQLAY I K+ KAHYV
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGRRQLAYPINKIHKAHYV 60

Query: 61  CLNIEVDGETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAVKSNRAEAP 120
            +NIE   E + E+ET F+FNDA+LRHLT+K K A T  SP+L   + ++ +     EA 
Sbjct: 61  LMNIETTPEVVEELETAFRFNDAILRHLTIKTKHAVTEASPMLGGEKAKNLLSGASEEAV 120

Query: 121 A 121
           A
Sbjct: 121 A 121


>VC0366 [J] COG0360 Ribosomal protein S6 Vch Vibrio cholerae
          Length = 122

 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 89/115 (77%), Gaps = 2/115 (1%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTARGGKIHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVF+VHPDQSEQV  MIERY G +T  GGKIHR+EDWGRRQLAY I KL KAHYV
Sbjct: 1   MRHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYV 60

Query: 61  CLNIEVDGETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAVKSN 115
            +N+E D   + E+ET F+FNDAVLR++ ++ K A T PS +LKA  +E+ VK +
Sbjct: 61  LMNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITEPSIMLKA--REERVKRD 113


>YPO3539 [J] COG0360 Ribosomal protein S6 Ype Yersinia pestis
          Length = 130

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 81/105 (77%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTARGGKIHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVF+VHPDQSEQVP MIERY   +T   G IHR+EDWGRRQLAY I KL KAHYV
Sbjct: 1   MRHYEIVFMVHPDQSEQVPGMIERYSATITNAAGTIHRLEDWGRRQLAYPINKLHKAHYV 60

Query: 61  CLNIEVDGETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKA 105
            LN+E   E + E+ET F+FNDAV+R + +++K A T  SP++KA
Sbjct: 61  LLNVEAPQEAIDELETNFRFNDAVIRSMVMRVKHAVTEASPMVKA 105