BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0034.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1309 [J] COG0238 Ribosomal protein S18 Rso Ralstonia solanace...   144   4e-35
NMB1321 [J] COG0238 Ribosomal protein S18 Nme Neisseria meningit...   115   3e-26
NMA1535 [J] COG0238 Ribosomal protein S18 NmA Neisseria meningit...   115   3e-26
STM4393 [J] COG0238 Ribosomal protein S18 Sty Salmonella typhimu...   112   3e-25
rpsR [J] COG0238 Ribosomal protein S18 Eco Escherichia coli K12       112   3e-25

>RSc1309 [J] COG0238 Ribosomal protein S18 Rso Ralstonia solanacearum
          Length = 92

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 77/83 (92%)

Query: 10 SKLKQKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHY 69
          +K K++ QQQNPLFKRKKFCRFT AGVEQ+DYKD+DTLKDF+ ENGKI PARLTGT++HY
Sbjct: 8  AKNKKRFQQQNPLFKRKKFCRFTVAGVEQIDYKDLDTLKDFIGENGKITPARLTGTRSHY 67

Query: 70 QRQVDTAIKRARYLALLPYTDLH 92
          QRQ+DTAIKRAR+LAL+PYTD H
Sbjct: 68 QRQLDTAIKRARFLALMPYTDQH 90


>NMB1321 [J] COG0238 Ribosomal protein S18 Nme Neisseria meningitidis MC58
          Length = 76

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 61/70 (87%)

Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82
          FKR+KFCRFTA  +++VDYK VD LKDF+ ENGKI+PAR+TGTKA YQRQ+  A+KRAR+
Sbjct: 6  FKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPARITGTKAFYQRQLAVAVKRARF 65

Query: 83 LALLPYTDLH 92
          LALLPYTD H
Sbjct: 66 LALLPYTDQH 75


>NMA1535 [J] COG0238 Ribosomal protein S18 NmA Neisseria meningitidis
          Z2491
          Length = 76

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 61/70 (87%)

Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82
          FKR+KFCRFTA  +++VDYK VD LKDF+ ENGKI+PAR+TGTKA YQRQ+  A+KRAR+
Sbjct: 6  FKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPARITGTKAFYQRQLAVAVKRARF 65

Query: 83 LALLPYTDLH 92
          LALLPYTD H
Sbjct: 66 LALLPYTDQH 75


>STM4393 [J] COG0238 Ribosomal protein S18 Sty Salmonella typhimurium LT2
          Length = 75

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 63/70 (90%)

Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82
          F+R+KFCRFTA GV+++DYKD+ TLK+++ E+GKI+P+R+TGT+A YQRQ+  AIKRARY
Sbjct: 5  FRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLRRAIKRARY 64

Query: 83 LALLPYTDLH 92
          L+LLPYTD H
Sbjct: 65 LSLLPYTDRH 74


>rpsR [J] COG0238 Ribosomal protein S18 Eco Escherichia coli K12
          Length = 75

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 63/70 (90%)

Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82
          F+R+KFCRFTA GV+++DYKD+ TLK+++ E+GKI+P+R+TGT+A YQRQ+  AIKRARY
Sbjct: 5  FRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARY 64

Query: 83 LALLPYTDLH 92
          L+LLPYTD H
Sbjct: 65 LSLLPYTDRH 74