BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0033.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1310 [J] COG0359 Ribosomal protein L9 Rso Ralstonia solanacearum   199   2e-51
NMB1320 [J] COG0359 Ribosomal protein L9 Nme Neisseria meningiti...   160   1e-39
NMA1534 [J] COG0359 Ribosomal protein L9 NmA Neisseria meningiti...   159   1e-39
VC0369 [J] COG0359 Ribosomal protein L9 Vch Vibrio cholerae           145   4e-35
rplI [J] COG0359 Ribosomal protein L9 Eco Escherichia coli K12        144   8e-35

>RSc1310 [J] COG0359 Ribosomal protein L9 Rso Ralstonia solanacearum
          Length = 150

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/134 (79%), Positives = 121/134 (90%)

Query: 1   MQVILLEKVVNLGGLGEVVRVKDGYARNFLIPQRMARRATAAAIAEFEAKRAELEKAAAE 60
           MQ+ILLEKVVNLG LG+VVRVKDGYARNFLIP + ARRATA+AI EFEA+RAELEK AAE
Sbjct: 1   MQIILLEKVVNLGNLGDVVRVKDGYARNFLIPNKQARRATASAIQEFEARRAELEKLAAE 60

Query: 61  KLAAAQAQGEKLAGLTVKITQKSGVDGRLFGSVTNFDIADALTKQGFPVEKAQVRLPQGP 120
           +LAAAQA+GEKL GLT++++QK+GVDGRLFGSVTN DIA ALT QGF VEKAQVR+P GP
Sbjct: 61  RLAAAQAEGEKLNGLTLQLSQKAGVDGRLFGSVTNHDIAAALTAQGFKVEKAQVRMPNGP 120

Query: 121 LKIVGDHAVSVALH 134
           LK VGDH V+V+LH
Sbjct: 121 LKTVGDHPVAVSLH 134


>NMB1320 [J] COG0359 Ribosomal protein L9 Nme Neisseria meningitidis MC58
          Length = 150

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 107/145 (73%)

Query: 1   MQVILLEKVVNLGGLGEVVRVKDGYARNFLIPQRMARRATAAAIAEFEAKRAELEKAAAE 60
           MQ+ILLEK+  LG LG++V VK+GYARNFLIP   A+RAT A + EFEA+RAELE   AE
Sbjct: 1   MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANMKEFEARRAELEAKQAE 60

Query: 61  KLAAAQAQGEKLAGLTVKITQKSGVDGRLFGSVTNFDIADALTKQGFPVEKAQVRLPQGP 120
            LA A+ + EKL G TV + QK+GVDGRLFGSVTN DIA A+   G    KA VRLP GP
Sbjct: 61  ILADARVRQEKLDGQTVTVAQKAGVDGRLFGSVTNADIAAAIVAAGIEAVKANVRLPNGP 120

Query: 121 LKIVGDHAVSVALHTDVVVDVTVAV 145
           LK VG++ V VALHTD V  +TVAV
Sbjct: 121 LKAVGEYEVEVALHTDAVAKITVAV 145


>NMA1534 [J] COG0359 Ribosomal protein L9 NmA Neisseria meningitidis Z2491
          Length = 150

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 107/145 (73%)

Query: 1   MQVILLEKVVNLGGLGEVVRVKDGYARNFLIPQRMARRATAAAIAEFEAKRAELEKAAAE 60
           MQ+ILLEK+  LG LG++V VK+GYARNFLIP   A+RAT A + EFEA+RAELE   AE
Sbjct: 1   MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANMKEFEARRAELEAKQAE 60

Query: 61  KLAAAQAQGEKLAGLTVKITQKSGVDGRLFGSVTNFDIADALTKQGFPVEKAQVRLPQGP 120
            LA A+ + EKL G T+ + QK+GVDGRLFGSVTN DIA A+   G    KA VRLP GP
Sbjct: 61  ILADARVRQEKLDGQTITVAQKAGVDGRLFGSVTNADIAAAIVAAGIEAVKANVRLPNGP 120

Query: 121 LKIVGDHAVSVALHTDVVVDVTVAV 145
           LK VG++ V VALHTD V  +TVAV
Sbjct: 121 LKAVGEYEVEVALHTDAVAKITVAV 145


>VC0369 [J] COG0359 Ribosomal protein L9 Vch Vibrio cholerae
          Length = 149

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 1   MQVILLEKVVNLGGLGEVVRVKDGYARNFLIPQRMARRATAAAIAEFEAKRAELEKAAAE 60
           MQVILL+K+ NLG LG+ V VK GYARNFLIPQ  A  AT A +A FE++RAELE   AE
Sbjct: 1   MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANVAMFESRRAELEAKVAE 60

Query: 61  KLAAAQAQGEKLAGL-TVKITQKSGVDGRLFGSVTNFDIADALTKQGFPVEKAQVRLPQG 119
           +LAAAQ + +++  L  V I  K+G +G+LFGS+   DIADA+T  G  V K++VRLP+G
Sbjct: 61  QLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADAITAAGVKVSKSEVRLPEG 120

Query: 120 PLKIVGDHAVSVALHTDVVVDVTVAVAGD 148
            L+ VG + VSV LH++V     V V  +
Sbjct: 121 ALRNVGAYEVSVQLHSEVFATAKVQVVAE 149


>rplI [J] COG0359 Ribosomal protein L9 Eco Escherichia coli K12
          Length = 149

 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 100/149 (67%), Gaps = 1/149 (0%)

Query: 1   MQVILLEKVVNLGGLGEVVRVKDGYARNFLIPQRMARRATAAAIAEFEAKRAELEKAAAE 60
           MQVILL+KV NLG LG+ V VK GYARNFL+PQ  A  AT   I  FEA+RAELE   AE
Sbjct: 1   MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60

Query: 61  KLAAAQAQGEKLAGL-TVKITQKSGVDGRLFGSVTNFDIADALTKQGFPVEKAQVRLPQG 119
            LAAA A+ EK+  L TV I  K+G +G+LFGS+   DIADA+T  G  V K++VRLP G
Sbjct: 61  VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120

Query: 120 PLKIVGDHAVSVALHTDVVVDVTVAVAGD 148
            L+  G+H VS  +H++V   V V V  +
Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNVVAE 149