BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0008.p         (336 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1360 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   224   1e-58
RSc3280 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   196   6e-50
BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella mel...   167   3e-41
SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...   160   3e-39
RSp0910 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   156   6e-38

>RSc1360 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 309

 Score =  224 bits (572), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 151/191 (79%), Gaps = 3/191 (1%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           M  FKQ+ TFV VA +GSLSAAA AEG+APA+IGRR+DALEERLGVKLL RTTR+I LT 
Sbjct: 1   MAHFKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTF 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
           EG+AFLEDCQRIL DL +AE+SVS    +ASG+L ++APAGFGR+HVAP+VP FL  H D
Sbjct: 61  EGSAFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPD 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIPXR 180
           V++TL+L DRIVDL+ EG D AIR+  L DS+L+S++L +N RVVVAAP+YL R G P +
Sbjct: 121 VSITLDLGDRIVDLVNEGFDCAIRLGDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQ 180

Query: 181 RPGAPQLPGHQ 191
                QL GH 
Sbjct: 181 ---LEQLAGHN 188


>RSc3280 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 303

 Score =  196 bits (498), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/178 (50%), Positives = 127/178 (71%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           MD+ KQI  F+ V   GS++AAA  + + P MIGRR++ALE RLGV+LL R+TR+I +T 
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVRLLHRSTRRIAVTE 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
           +GA F+E C++ L++L+ AE  V+E   +A+G+L++SAPA FGR+HVAP  P+FL  + D
Sbjct: 61  QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPAFLRANPD 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178
           V L+ NL DR+VDL+ EG D+ IRI    D N ++++LA N RVV   P Y  RHG+P
Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAIDPNFVAIRLASNQRVVCGTPDYFARHGVP 178


>BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella melitensis
          Length = 325

 Score =  167 bits (423), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 119/178 (66%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           M     +  F  V A GS+SAAAR  G++PA++ +RL  LEERLG +LLQRTTR+I LT 
Sbjct: 21  MSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTE 80

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
            G  + E    IL ++E+AE+ V+ RSA A G L ISAP  FGR H+AP +  F+  + D
Sbjct: 81  AGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANAD 140

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178
           +T+ + L+D +VD++G+G D+AIRI  L+DS L++ +LA   R+ VAAP YL+  G P
Sbjct: 141 LTVNMQLSDEMVDIVGDGYDLAIRIGELSDSTLVARRLAPVRRIFVAAPRYLKERGTP 198


>SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 298

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 114/178 (64%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           M     +  F  V + GS+SAA RA G + A+I +R+  LE+RLG +LLQRTTR+I LT 
Sbjct: 1   MTNLGDLEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTE 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
            G  F +    IL  LE+AE+  S RS++  G L ISAP  FGR H+AP +  F+ +H D
Sbjct: 61  AGQGFYDRVLGILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPD 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178
           + L + L D   D++ EG D+AIRI  L+DS+L++ KLA   R++ AAPSY+ RHG P
Sbjct: 121 LKLHIVLTDDFTDIVAEGFDLAIRIGELSDSSLVARKLAPVRRLLCAAPSYVARHGAP 178


>RSp0910 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 309

 Score =  156 bits (394), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 116/178 (65%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           MD+F  +S FV V   G  + AAR  G+AP+ + R+L+ALE  LG +L+ R+TR + LT 
Sbjct: 1   MDRFGALSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTE 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
            GA + +D +RIL +L+ A+ +VSE +   SG L ++ P  FGR HVAP +P+FL     
Sbjct: 61  AGAQYYDDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPG 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178
           + L + L D +V+L+ + +DVAIR+ ALT  NL++ KLA + RV+ A+P YL  HG P
Sbjct: 121 MRLDIRLTDAMVNLVEDRIDVAIRLGALTAPNLVARKLAPHRRVICASPDYLGEHGTP 178